Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC6.1□□□□□ -1.43
COL5A3P25940 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL5A3P25940 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC6.1□□□□□ -1.43
COL5A3P25940 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC6.1□□□□□ -1.43
COL5A3P25940 MIR3939-201ENST00000582614 106 ntBASIC6.1□□□□□ -1.43
COL5A3P25940 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.1□□□□□ -1.43
COL5A3P25940 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL5A3P25940 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
COL5A3P25940 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL5A3P25940 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL5A3P25940 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL5A3P25940 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL5A3P25940 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL5A3P25940 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL5A3P25940 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL5A3P25940 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC6.09□□□□□ -1.43
COL5A3P25940 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC6.09□□□□□ -1.43
COL5A3P25940 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
COL5A3P25940 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL5A3P25940 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
COL5A3P25940 AP005432.1-201ENST00000580891 3485 ntBASIC6.09□□□□□ -1.43
COL5A3P25940 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL5A3P25940 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC6.09□□□□□ -1.43
COL5A3P25940 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL5A3P25940 RAD23BP1-201ENST00000421404 1227 ntBASIC6.09□□□□□ -1.43
COL5A3P25940 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC6.09□□□□□ -1.43
COL5A3P25940 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL5A3P25940 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL5A3P25940 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC6.09□□□□□ -1.43
COL5A3P25940 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC6.09□□□□□ -1.43
COL5A3P25940 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC6.09□□□□□ -1.43
COL5A3P25940 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC6.09□□□□□ -1.43
COL5A3P25940 MIR1254-2-201ENST00000579553 63 ntBASIC6.09□□□□□ -1.43
COL5A3P25940 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC6.09□□□□□ -1.43
COL5A3P25940 AC018695.5-201ENST00000605872 315 ntBASIC6.09□□□□□ -1.43
COL5A3P25940 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC6.09□□□□□ -1.43
COL5A3P25940 AC002044.3-201ENST00000623314 541 ntBASIC6.09□□□□□ -1.43
COL5A3P25940 AP000843.1-201ENST00000624880 701 ntBASIC6.09□□□□□ -1.43
COL5A3P25940 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL5A3P25940 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL5A3P25940 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC6.09□□□□□ -1.43
COL5A3P25940 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL5A3P25940 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
COL5A3P25940 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.09□□□□□ -1.44
COL5A3P25940 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
COL5A3P25940 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC6.09□□□□□ -1.44
COL5A3P25940 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL5A3P25940 AC073365.1-203ENST00000641055 1992 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC6.08□□□□□ -1.44
COL5A3P25940 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL5A3P25940 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
COL5A3P25940 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.08□□□□□ -1.44
COL5A3P25940 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL5A3P25940 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
COL5A3P25940 MIR659-201ENST00000384963 97 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 MIR134-201ENST00000385258 73 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 RNU6ATAC5P-201ENST00000388104 126 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 AC140479.3-201ENST00000418944 1126 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 VN1R37P-201ENST00000419096 748 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC6.08□□□□□ -1.44
COL5A3P25940 RPS3AP54-201ENST00000435535 734 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC6.08□□□□□ -1.44
COL5A3P25940 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC6.08□□□□□ -1.44
COL5A3P25940 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC6.08□□□□□ -1.44
COL5A3P25940 RNU6ATAC28P-201ENST00000459249 118 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 AC015795.1-201ENST00000513669 327 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 RNU6-709P-201ENST00000517257 104 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL5A3P25940 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC6.08□□□□□ -1.44
COL5A3P25940 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC6.08□□□□□ -1.44
COL5A3P25940 AC023575.1-201ENST00000580510 358 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC6.08□□□□□ -1.44
COL5A3P25940 RNF138P2-201ENST00000603490 592 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC6.08□□□□□ -1.44
COL5A3P25940 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
COL5A3P25940 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL5A3P25940 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL5A3P25940 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC6.08□□□□□ -1.44
COL5A3P25940 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL5A3P25940 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL5A3P25940 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL5A3P25940 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC6.08□□□□□ -1.44
COL5A3P25940 RPL17P36-201ENST00000420302 549 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 AC007016.1-201ENST00000512110 244 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 AC026688.1-201ENST00000520639 1168 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC6.08□□□□□ -1.44
COL5A3P25940 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC6.08□□□□□ -1.44
COL5A3P25940 AC021483.2-201ENST00000567415 758 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 VN1R85P-201ENST00000601587 426 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 AC026367.3-201ENST00000619032 590 ntBASIC6.08□□□□□ -1.44
COL5A3P25940 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC6.08□□□□□ -1.44
COL5A3P25940 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL5A3P25940 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL5A3P25940 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL5A3P25940 AC002525.1-201ENST00000624392 1622 ntBASIC6.07□□□□□ -1.44
COL5A3P25940 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL5A3P25940 RAD17P1-201ENST00000418130 2042 ntBASIC6.07□□□□□ -1.44
COL5A3P25940 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC6.07□□□□□ -1.44
COL5A3P25940 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms