Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
TRIM35Q9UPQ4 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
TRIM35Q9UPQ4 AC011193.2-201ENST00000582638 367 ntBASIC9.56□□□□□ -0.88
TRIM35Q9UPQ4 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC9.56□□□□□ -0.88
TRIM35Q9UPQ4 AP2B1-217ENST00000618940 3415 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
TRIM35Q9UPQ4 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC9.56□□□□□ -0.88
TRIM35Q9UPQ4 GRIK2-207ENST00000421544 4789 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
TRIM35Q9UPQ4 WDR44-201ENST00000254029 4111 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
TRIM35Q9UPQ4 CD40LG-201ENST00000370628 1720 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
TRIM35Q9UPQ4 MUSK-205ENST00000374448 2754 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.88
TRIM35Q9UPQ4 CDK15-201ENST00000260967 1635 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
TRIM35Q9UPQ4 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
TRIM35Q9UPQ4 CAST-228ENST00000509903 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
TRIM35Q9UPQ4 ZNF667-206ENST00000591790 5250 ntTSL 2 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 ZNF69-202ENST00000429654 2010 ntAPPRIS P1 TSL 2 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 MIAT-218ENST00000613780 10143 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 CASC19-221ENST00000641309 1382 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 PDE11A-212ENST00000358450 3489 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 KCNJ15-205ENST00000398930 2914 ntAPPRIS P1 TSL 5 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 RNU6-282P-201ENST00000365357 103 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 MXI1-204ENST00000369612 879 ntTSL 3 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 NCR2-201ENST00000373083 1154 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 CASP10-206ENST00000374650 1126 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 SPA17P1-201ENST00000416656 452 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AL451054.2-201ENST00000420896 202 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AC114752.2-201ENST00000424119 404 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 ATP5JP1-201ENST00000431631 322 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AL160004.2-201ENST00000432935 350 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 USP24P1-201ENST00000433802 779 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AL606489.2-201ENST00000433886 234 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 RPL7P15-201ENST00000461190 712 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 CBX5P1-201ENST00000468470 561 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 FCRL2-205ENST00000469986 902 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 TUBBP11-201ENST00000472255 252 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AC110794.1-201ENST00000505816 425 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 RGS5-218ENST00000526176 574 ntTSL 4 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AP001994.1-201ENST00000527539 826 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AC007950.1-201ENST00000560465 615 ntTSL 3 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 NDUFA3P4-201ENST00000560814 250 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AC004494.1-202ENST00000573820 480 ntTSL 4 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AC027796.1-201ENST00000575593 512 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AC006441.4-202ENST00000577621 510 ntTSL 3 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 MIR1273F-201ENST00000580581 99 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AC009303.2-206ENST00000588042 786 ntTSL 5 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AL136139.1-201ENST00000605568 222 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AC096772.1-201ENST00000609146 564 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AC103710.4-201ENST00000609301 899 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AC092650.2-201ENST00000619984 902 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AL359757.2-201ENST00000624309 274 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 AL133216.2-202ENST00000634512 349 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 OR52K3P-202ENST00000641797 1729 ntBASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 ERC1-203ENST00000360905 5789 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 PIGN-225ENST00000638435 4382 ntTSL 5 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 HERC4-202ENST00000373700 3905 ntAPPRIS P3 TSL 1 (best) BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 LRAT-206ENST00000507827 2654 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 ADGRB3-201ENST00000238918 2927 ntTSL 2 BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 MYO5C-201ENST00000261839 6971 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
TRIM35Q9UPQ4 C10orf25-201ENST00000625168 3078 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 TFRC-203ENST00000420415 4814 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 KIF1B-201ENST00000263934 6816 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 SLC39A12-203ENST00000377374 2639 ntAPPRIS P3 TSL 2 BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 LINC02099-202ENST00000522158 2980 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 NUP58P1-201ENST00000502546 1738 ntBASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 EIF4B-201ENST00000262056 4148 ntAPPRIS P3 TSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 CSTF2T-201ENST00000331173 4105 ntAPPRIS P1 BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 PARP9-202ENST00000462315 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 GRB10-207ENST00000402578 4760 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 OR51L1-201ENST00000321543 948 ntAPPRIS P1 BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 RNA5SP218-201ENST00000363188 109 ntBASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 MIR205HG-201ENST00000366437 704 ntTSL 3 BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 RPS4XP8-201ENST00000402039 771 ntBASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 BTF3P9-201ENST00000418784 283 ntBASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 GRPEL2P2-201ENST00000421856 670 ntBASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 DPH3P2-201ENST00000422618 250 ntBASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 AL606753.1-201ENST00000427435 87 ntBASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 SRIP2-201ENST00000428470 166 ntBASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 SKP1P1-201ENST00000438081 489 ntBASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC9.54□□□□□ -0.88
TRIM35Q9UPQ4 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC9.54□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms