Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AL133481.2-203ENST00000607558 139 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AC140725.3-201ENST00000616193 880 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AL512427.1-201ENST00000618593 349 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 OR8G3P-202ENST00000641572 1255 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 OR9K1P-202ENST00000641111 3217 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AC093849.1-201ENST00000563631 2209 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 MFSD8-213ENST00000641134 1327 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 RNU6-31P-201ENST00000384388 108 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 SNRPEP6-201ENST00000407465 277 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 RPS26P13-201ENST00000419030 330 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 RPL34P3-201ENST00000421454 338 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 PCBP2P1-201ENST00000437262 977 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AC069277.2-201ENST00000454211 432 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 RPL21P47-201ENST00000483696 477 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 EIF1P7-201ENST00000487533 337 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 RPL32P9-201ENST00000487963 407 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AC008427.1-201ENST00000503102 655 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AL121594.2-201ENST00000541658 472 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AC010547.6-201ENST00000571789 193 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AL445435.1-201ENST00000604232 665 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 Z95327.3-201ENST00000610385 572 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AC016769.4-201ENST00000616893 535 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AL357562.1-201ENST00000624911 609 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 HSPA8P14-201ENST00000552265 1805 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AL603750.1-201ENST00000624216 1717 ntBASIC5.6□□□□□ -1.51
VPS4AQ9UN37 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS4AQ9UN37 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS4AQ9UN37 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS4AQ9UN37 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS4AQ9UN37 AF287957.1-201ENST00000607368 1595 ntBASIC5.59□□□□□ -1.51
VPS4AQ9UN37 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS4AQ9UN37 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS4AQ9UN37 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS4AQ9UN37 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS4AQ9UN37 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS4AQ9UN37 SNORA58B-201ENST00000364259 136 ntBASIC5.59□□□□□ -1.51
VPS4AQ9UN37 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS4AQ9UN37 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS4AQ9UN37 AC234772.1-201ENST00000377927 937 ntBASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms