Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
CUX1P39880 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC8.19□□□□□ -1.1
CUX1P39880 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
CUX1P39880 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
CUX1P39880 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC8.19□□□□□ -1.1
CUX1P39880 MR1-209ENST00000617803 7584 ntTSL 5 BASIC8.19□□□□□ -1.1
CUX1P39880 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC8.19□□□□□ -1.1
CUX1P39880 GAPDHP49-201ENST00000421421 961 ntBASIC8.19□□□□□ -1.1
CUX1P39880 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC8.19□□□□□ -1.1
CUX1P39880 BX276092.6-201ENST00000430476 250 ntBASIC8.19□□□□□ -1.1
CUX1P39880 BX276092.8-201ENST00000455722 250 ntBASIC8.19□□□□□ -1.1
CUX1P39880 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC8.19□□□□□ -1.1
CUX1P39880 DERA-209ENST00000532964 854 ntTSL 5 BASIC8.19□□□□□ -1.1
CUX1P39880 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC8.19□□□□□ -1.1
CUX1P39880 AL109766.1-201ENST00000555080 552 ntBASIC8.19□□□□□ -1.1
CUX1P39880 AC116553.2-201ENST00000564203 463 ntBASIC8.19□□□□□ -1.1
CUX1P39880 AL139041.1-201ENST00000605480 610 ntBASIC8.19□□□□□ -1.1
CUX1P39880 MIR6716-201ENST00000613413 80 ntBASIC8.19□□□□□ -1.1
CUX1P39880 AL355834.1-201ENST00000556602 3965 ntBASIC8.18□□□□□ -1.1
CUX1P39880 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
CUX1P39880 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC8.18□□□□□ -1.1
CUX1P39880 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC8.18□□□□□ -1.1
CUX1P39880 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC8.18□□□□□ -1.1
CUX1P39880 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
CUX1P39880 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC8.18□□□□□ -1.1
CUX1P39880 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
CUX1P39880 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
CUX1P39880 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC8.18□□□□□ -1.1
CUX1P39880 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
CUX1P39880 SNORA73.1-201ENST00000363107 205 ntBASIC8.18□□□□□ -1.1
CUX1P39880 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC8.18□□□□□ -1.1
CUX1P39880 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC8.18□□□□□ -1.1
CUX1P39880 KCTD10P1-201ENST00000434203 625 ntBASIC8.18□□□□□ -1.1
CUX1P39880 AC023271.1-201ENST00000445936 1090 ntBASIC8.18□□□□□ -1.1
CUX1P39880 AC026688.1-201ENST00000520639 1168 ntBASIC8.18□□□□□ -1.1
CUX1P39880 AC092709.1-201ENST00000521355 1045 ntBASIC8.18□□□□□ -1.1
CUX1P39880 AP001781.1-201ENST00000530977 207 ntBASIC8.18□□□□□ -1.1
CUX1P39880 CYCSP29-201ENST00000533731 318 ntBASIC8.18□□□□□ -1.1
CUX1P39880 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
CUX1P39880 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
CUX1P39880 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC8.18□□□□□ -1.1
CUX1P39880 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC8.18□□□□□ -1.1
CUX1P39880 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
CUX1P39880 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC8.18□□□□□ -1.1
CUX1P39880 AC093829.1-201ENST00000506662 1618 ntBASIC8.17□□□□□ -1.1
CUX1P39880 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CUX1P39880 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC8.17□□□□□ -1.1
CUX1P39880 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CUX1P39880 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC8.17□□□□□ -1.1
CUX1P39880 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC8.17□□□□□ -1.1
CUX1P39880 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC8.17□□□□□ -1.1
CUX1P39880 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
CUX1P39880 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CUX1P39880 RNA5SP509-201ENST00000364577 119 ntBASIC8.17□□□□□ -1.1
CUX1P39880 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CUX1P39880 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC8.17□□□□□ -1.1
CUX1P39880 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
CUX1P39880 SNORA57.1-201ENST00000391227 145 ntBASIC8.17□□□□□ -1.1
CUX1P39880 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC8.17□□□□□ -1.1
CUX1P39880 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC8.17□□□□□ -1.1
CUX1P39880 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC8.17□□□□□ -1.1
CUX1P39880 AC108751.3-201ENST00000461814 1020 ntBASIC8.17□□□□□ -1.1
CUX1P39880 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC8.17□□□□□ -1.1
CUX1P39880 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC8.17□□□□□ -1.1
CUX1P39880 MIR1254-2-201ENST00000579553 63 ntBASIC8.17□□□□□ -1.1
CUX1P39880 AC100847.1-201ENST00000611316 481 ntBASIC8.17□□□□□ -1.1
CUX1P39880 AC245389.2-201ENST00000616023 576 ntBASIC8.17□□□□□ -1.1
CUX1P39880 AC242843.1-201ENST00000618702 573 ntBASIC8.17□□□□□ -1.1
CUX1P39880 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC8.17□□□□□ -1.1
CUX1P39880 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CUX1P39880 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC8.17□□□□□ -1.1
CUX1P39880 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC8.17□□□□□ -1.1
CUX1P39880 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.1
CUX1P39880 CASC19-260ENST00000641828 2001 ntBASIC8.16□□□□□ -1.1
CUX1P39880 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CUX1P39880 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CUX1P39880 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CUX1P39880 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC8.16□□□□□ -1.1
CUX1P39880 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC8.16□□□□□ -1.1
CUX1P39880 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC8.16□□□□□ -1.1
CUX1P39880 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CUX1P39880 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CUX1P39880 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CUX1P39880 RNA5SP28-201ENST00000363841 119 ntBASIC8.16□□□□□ -1.1
CUX1P39880 SNORA48.4-201ENST00000391089 134 ntBASIC8.16□□□□□ -1.1
CUX1P39880 AC108463.1-201ENST00000450258 347 ntBASIC8.16□□□□□ -1.1
CUX1P39880 Z95152.1-201ENST00000453556 656 ntBASIC8.16□□□□□ -1.1
CUX1P39880 AC007537.2-201ENST00000472093 511 ntBASIC8.16□□□□□ -1.1
CUX1P39880 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC8.16□□□□□ -1.1
CUX1P39880 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC8.16□□□□□ -1.1
CUX1P39880 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC8.16□□□□□ -1.1
CUX1P39880 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC8.16□□□□□ -1.1
CUX1P39880 AL162574.1-201ENST00000615702 950 ntBASIC8.16□□□□□ -1.1
CUX1P39880 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CUX1P39880 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC8.16□□□□□ -1.1
CUX1P39880 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC8.16□□□□□ -1.1
CUX1P39880 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CUX1P39880 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC8.15□□□□□ -1.1
CUX1P39880 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
CUX1P39880 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC8.15□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 128.6 ms