Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MIR4433B-201ENST00000581329 102 ntBASIC4.84□□□□□ -1.63
LMX1BO60663 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.84□□□□□ -1.63
LMX1BO60663 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC4.84□□□□□ -1.63
LMX1BO60663 AC063977.5-201ENST00000601044 974 ntBASIC4.84□□□□□ -1.63
LMX1BO60663 AC009237.13-201ENST00000603193 276 ntBASIC4.84□□□□□ -1.63
LMX1BO60663 IGLCOR22-2-201ENST00000605398 313 ntBASIC4.84□□□□□ -1.63
LMX1BO60663 AL139124.1-201ENST00000609123 421 ntBASIC4.84□□□□□ -1.63
LMX1BO60663 AP001033.2-201ENST00000609701 1003 ntBASIC4.84□□□□□ -1.63
LMX1BO60663 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.84□□□□□ -1.63
LMX1BO60663 CASC19-222ENST00000641321 1173 ntBASIC4.84□□□□□ -1.63
LMX1BO60663 SAMMSON-227ENST00000642114 1199 ntBASIC4.84□□□□□ -1.63
LMX1BO60663 AL034546.1-201ENST00000623740 3693 ntBASIC4.84□□□□□ -1.63
LMX1BO60663 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
LMX1BO60663 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.84□□□□□ -1.63
LMX1BO60663 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC4.84□□□□□ -1.63
LMX1BO60663 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
LMX1BO60663 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.84□□□□□ -1.63
LMX1BO60663 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.64
LMX1BO60663 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC4.84□□□□□ -1.64
LMX1BO60663 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
LMX1BO60663 AL359715.3-201ENST00000569267 2123 ntBASIC4.84□□□□□ -1.64
LMX1BO60663 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC4.84□□□□□ -1.64
LMX1BO60663 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LMX1BO60663 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LMX1BO60663 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.83□□□□□ -1.64
LMX1BO60663 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.83□□□□□ -1.64
LMX1BO60663 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
LMX1BO60663 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LMX1BO60663 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LMX1BO60663 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
LMX1BO60663 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC4.83□□□□□ -1.64
LMX1BO60663 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
LMX1BO60663 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
LMX1BO60663 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
LMX1BO60663 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
LMX1BO60663 SNORA5.1-201ENST00000384275 131 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 GPS2P1-201ENST00000411761 986 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 AL596448.1-201ENST00000415024 392 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC4.83□□□□□ -1.64
LMX1BO60663 AC092570.3-201ENST00000420113 693 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 AC009506.2-201ENST00000420635 840 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 AC013268.2-201ENST00000420753 337 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC4.83□□□□□ -1.64
LMX1BO60663 MTCO2P23-201ENST00000425216 680 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 NPM1P22-201ENST00000427761 952 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 RPL7P56-201ENST00000429441 717 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 AL645931.1-201ENST00000439737 410 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC4.83□□□□□ -1.64
LMX1BO60663 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.83□□□□□ -1.64
LMX1BO60663 AL596266.1-201ENST00000448132 400 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 RPS23P6-201ENST00000466136 431 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 SNRPCP3-201ENST00000474888 476 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 RN7SL583P-201ENST00000475692 287 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LMX1BO60663 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC4.83□□□□□ -1.64
LMX1BO60663 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC4.83□□□□□ -1.64
LMX1BO60663 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC4.83□□□□□ -1.64
LMX1BO60663 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC4.83□□□□□ -1.64
LMX1BO60663 PMS2P3-207ENST00000529061 717 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.83□□□□□ -1.64
LMX1BO60663 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC4.83□□□□□ -1.64
LMX1BO60663 DPPA2P4-201ENST00000563717 878 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 AC106730.2-201ENST00000566641 540 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.83□□□□□ -1.64
LMX1BO60663 MIR4311-201ENST00000580794 100 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.83□□□□□ -1.64
LMX1BO60663 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC4.83□□□□□ -1.64
LMX1BO60663 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC4.83□□□□□ -1.64
LMX1BO60663 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC4.83□□□□□ -1.64
LMX1BO60663 AL162574.1-201ENST00000615702 950 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 AC118658.2-201ENST00000618697 459 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC4.83□□□□□ -1.64
LMX1BO60663 AC068057.2-201ENST00000624047 895 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC4.83□□□□□ -1.64
LMX1BO60663 AL360270.2-201ENST00000562952 5985 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.83□□□□□ -1.64
LMX1BO60663 AFP-201ENST00000226359 1914 ntTSL 5 BASIC4.83□□□□□ -1.64
LMX1BO60663 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
LMX1BO60663 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LMX1BO60663 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LMX1BO60663 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC4.83□□□□□ -1.64
LMX1BO60663 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.83□□□□□ -1.64
LMX1BO60663 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC4.83□□□□□ -1.64
LMX1BO60663 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LMX1BO60663 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC4.83□□□□□ -1.64
LMX1BO60663 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LMX1BO60663 MRRFP1-201ENST00000435941 1675 ntBASIC4.83□□□□□ -1.64
LMX1BO60663 LARS-201ENST00000274562 2213 ntTSL 2 BASIC4.82□□□□□ -1.64
LMX1BO60663 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC4.82□□□□□ -1.64
LMX1BO60663 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LMX1BO60663 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LMX1BO60663 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LMX1BO60663 CASC19-255ENST00000641733 1385 ntBASIC4.82□□□□□ -1.64
LMX1BO60663 AC109780.1-201ENST00000451768 1344 ntBASIC4.82□□□□□ -1.64
LMX1BO60663 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LMX1BO60663 AC003973.3-201ENST00000624863 2822 ntBASIC4.82□□□□□ -1.64
LMX1BO60663 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LMX1BO60663 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LMX1BO60663 MIR421-201ENST00000365696 85 ntBASIC4.82□□□□□ -1.64
LMX1BO60663 AL353625.1-202ENST00000366273 571 ntBASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms