Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC42Q96M95 AC107977.1-201ENST00000355745 939 ntBASIC5.39□□□□□ -1.55
CCDC42Q96M95 SNORA73.1-201ENST00000363107 205 ntBASIC5.39□□□□□ -1.55
CCDC42Q96M95 AL359643.1-201ENST00000404109 423 ntBASIC5.39□□□□□ -1.55
CCDC42Q96M95 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC42Q96M95 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC42Q96M95 HSPE1P27-201ENST00000430808 296 ntBASIC5.39□□□□□ -1.55
CCDC42Q96M95 RPS26P4-201ENST00000431743 355 ntBASIC5.39□□□□□ -1.55
CCDC42Q96M95 AC073052.1-201ENST00000440417 714 ntBASIC5.39□□□□□ -1.55
CCDC42Q96M95 RN7SL799P-201ENST00000475891 298 ntBASIC5.39□□□□□ -1.55
CCDC42Q96M95 AL671862.1-201ENST00000515851 349 ntBASIC5.39□□□□□ -1.55
CCDC42Q96M95 AL390726.5-202ENST00000564800 256 ntBASIC5.39□□□□□ -1.55
CCDC42Q96M95 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC42Q96M95 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC42Q96M95 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.39□□□□□ -1.55
CCDC42Q96M95 AC109309.2-201ENST00000612597 332 ntBASIC5.39□□□□□ -1.55
CCDC42Q96M95 AC022106.2-201ENST00000620114 757 ntBASIC5.39□□□□□ -1.55
CCDC42Q96M95 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC42Q96M95 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
CCDC42Q96M95 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC42Q96M95 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC42Q96M95 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.39□□□□□ -1.55
CCDC42Q96M95 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
CCDC42Q96M95 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC42Q96M95 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC42Q96M95 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC42Q96M95 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC42Q96M95 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 AC126323.6-202ENST00000568092 3511 ntBASIC5.38□□□□□ -1.55
CCDC42Q96M95 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC42Q96M95 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC42Q96M95 UBBP2-201ENST00000376781 231 ntBASIC5.38□□□□□ -1.55
CCDC42Q96M95 SNORA77-201ENST00000408716 125 ntBASIC5.38□□□□□ -1.55
CCDC42Q96M95 SLC35E1P1-201ENST00000419313 864 ntBASIC5.38□□□□□ -1.55
CCDC42Q96M95 RPL24P2-201ENST00000421023 475 ntBASIC5.38□□□□□ -1.55
CCDC42Q96M95 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 BX323845.1-201ENST00000432417 179 ntBASIC5.38□□□□□ -1.55
CCDC42Q96M95 RPS29P9-201ENST00000440360 171 ntBASIC5.38□□□□□ -1.55
CCDC42Q96M95 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 RPS17P2-201ENST00000461663 408 ntBASIC5.38□□□□□ -1.55
CCDC42Q96M95 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 AC073358.1-201ENST00000505671 684 ntBASIC5.38□□□□□ -1.55
CCDC42Q96M95 AC012339.2-201ENST00000523996 453 ntBASIC5.38□□□□□ -1.55
CCDC42Q96M95 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 AC233702.9-201ENST00000581528 203 ntBASIC5.38□□□□□ -1.55
CCDC42Q96M95 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 AL359513.1-201ENST00000614364 557 ntBASIC5.38□□□□□ -1.55
CCDC42Q96M95 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 AC090527.3-201ENST00000619041 548 ntBASIC5.38□□□□□ -1.55
CCDC42Q96M95 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC42Q96M95 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC42Q96M95 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
CCDC42Q96M95 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC42Q96M95 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC42Q96M95 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC42Q96M95 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC42Q96M95 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC42Q96M95 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC42Q96M95 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CCDC42Q96M95 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
CCDC42Q96M95 RN7SKP125-201ENST00000410481 302 ntBASIC5.37□□□□□ -1.55
CCDC42Q96M95 RN7SKP293-201ENST00000411389 296 ntBASIC5.37□□□□□ -1.55
CCDC42Q96M95 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC42Q96M95 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC42Q96M95 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC42Q96M95 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC42Q96M95 CYCSP34-201ENST00000458172 304 ntBASIC5.37□□□□□ -1.55
CCDC42Q96M95 AP000942.1-201ENST00000463969 747 ntBASIC5.37□□□□□ -1.55
CCDC42Q96M95 AC112206.1-201ENST00000468416 477 ntBASIC5.37□□□□□ -1.55
CCDC42Q96M95 AC020890.1-201ENST00000491837 504 ntBASIC5.37□□□□□ -1.55
CCDC42Q96M95 RFPL4AP5-201ENST00000514977 504 ntBASIC5.37□□□□□ -1.55
CCDC42Q96M95 AC024940.3-201ENST00000538551 316 ntBASIC5.37□□□□□ -1.55
CCDC42Q96M95 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC42Q96M95 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC42Q96M95 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC42Q96M95 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC42Q96M95 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC42Q96M95 AC007204.2-201ENST00000615022 616 ntBASIC5.37□□□□□ -1.55
CCDC42Q96M95 TMEM30CP-203ENST00000637814 1035 ntBASIC5.37□□□□□ -1.55
CCDC42Q96M95 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC42Q96M95 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC42Q96M95 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.37□□□□□ -1.55
CCDC42Q96M95 SALL4P2-201ENST00000423288 2910 ntBASIC5.37□□□□□ -1.55
CCDC42Q96M95 ICE2P1-201ENST00000512800 1849 ntBASIC5.37□□□□□ -1.55
CCDC42Q96M95 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC42Q96M95 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC42Q96M95 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 FIG4-202ENST00000368941 791 ntTSL 3 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms