Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 NDUFB4P11-201ENST00000560510 395 ntBASIC6.15□□□□□ -1.42
COL5A3P25940 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A3P25940 AC022726.1-201ENST00000587475 207 ntBASIC6.15□□□□□ -1.42
COL5A3P25940 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC6.15□□□□□ -1.42
COL5A3P25940 AC092653.1-201ENST00000608509 531 ntBASIC6.15□□□□□ -1.42
COL5A3P25940 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A3P25940 AC004232.3-201ENST00000622977 525 ntBASIC6.15□□□□□ -1.42
COL5A3P25940 AC107068.1-201ENST00000563286 4218 ntBASIC6.15□□□□□ -1.42
COL5A3P25940 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
COL5A3P25940 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL5A3P25940 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL5A3P25940 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.15□□□□□ -1.43
COL5A3P25940 CASC19-260ENST00000641828 2001 ntBASIC6.15□□□□□ -1.43
COL5A3P25940 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL5A3P25940 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.15□□□□□ -1.43
COL5A3P25940 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.43
COL5A3P25940 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL5A3P25940 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL5A3P25940 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC6.15□□□□□ -1.43
COL5A3P25940 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL5A3P25940 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC6.14□□□□□ -1.43
COL5A3P25940 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC6.14□□□□□ -1.43
COL5A3P25940 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A3P25940 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A3P25940 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC6.14□□□□□ -1.43
COL5A3P25940 AL359265.1-201ENST00000440296 795 ntBASIC6.14□□□□□ -1.43
COL5A3P25940 YWHAZP2-201ENST00000440317 728 ntBASIC6.14□□□□□ -1.43
COL5A3P25940 H3F3BP1-201ENST00000440551 403 ntBASIC6.14□□□□□ -1.43
COL5A3P25940 GAPDHP14-201ENST00000450472 937 ntBASIC6.14□□□□□ -1.43
COL5A3P25940 AC136777.2-201ENST00000522979 358 ntBASIC6.14□□□□□ -1.43
COL5A3P25940 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC6.14□□□□□ -1.43
COL5A3P25940 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC6.14□□□□□ -1.43
COL5A3P25940 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC6.14□□□□□ -1.43
COL5A3P25940 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A3P25940 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
COL5A3P25940 AC008758.3-201ENST00000507003 1829 ntBASIC6.14□□□□□ -1.43
COL5A3P25940 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A3P25940 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A3P25940 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.14□□□□□ -1.43
COL5A3P25940 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC6.14□□□□□ -1.43
COL5A3P25940 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC6.14□□□□□ -1.43
COL5A3P25940 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A3P25940 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC6.14□□□□□ -1.43
COL5A3P25940 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
COL5A3P25940 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A3P25940 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC6.14□□□□□ -1.43
COL5A3P25940 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL5A3P25940 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL5A3P25940 RN7SKP17-201ENST00000411242 351 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 AL732292.1-201ENST00000426692 226 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 RPL34P27-201ENST00000428810 349 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A3P25940 AC138761.5-201ENST00000433967 325 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC6.13□□□□□ -1.43
COL5A3P25940 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A3P25940 AC091153.1-201ENST00000466297 402 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL5A3P25940 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC6.13□□□□□ -1.43
COL5A3P25940 AC092709.1-201ENST00000521355 1045 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC6.13□□□□□ -1.43
COL5A3P25940 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A3P25940 AC133555.2-201ENST00000550213 292 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A3P25940 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A3P25940 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC6.13□□□□□ -1.43
COL5A3P25940 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A3P25940 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A3P25940 AC073091.2-201ENST00000603205 907 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A3P25940 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A3P25940 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A3P25940 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
COL5A3P25940 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
COL5A3P25940 NACA-203ENST00000454682 6629 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A3P25940 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL5A3P25940 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A3P25940 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC6.13□□□□□ -1.43
COL5A3P25940 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A3P25940 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL5A3P25940 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
COL5A3P25940 RNA5SP28-201ENST00000363841 119 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 RNU1-13P-201ENST00000384499 162 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC6.13□□□□□ -1.43
COL5A3P25940 MTND2P40-201ENST00000436718 841 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 ENPP7P11-201ENST00000505915 627 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 RNU1-6P-201ENST00000516290 144 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 IGKV2D-10-201ENST00000520194 281 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A3P25940 AL109766.1-201ENST00000555080 552 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC6.13□□□□□ -1.43
COL5A3P25940 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC6.13□□□□□ -1.43
COL5A3P25940 SS18L2P2-201ENST00000583960 235 ntBASIC6.13□□□□□ -1.43
COL5A3P25940 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A3P25940 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A3P25940 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.13□□□□□ -1.43
COL5A3P25940 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC6.13□□□□□ -1.43
COL5A3P25940 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
COL5A3P25940 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC6.12□□□□□ -1.43
COL5A3P25940 ACTR3BP2-202ENST00000623630 1338 ntBASIC6.12□□□□□ -1.43
COL5A3P25940 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms