Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC7.98□□□□□ -1.13
COL9A1P20849 Y_RNA.364-201ENST00000365532 101 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC7.98□□□□□ -1.13
COL9A1P20849 Y_RNA.455-201ENST00000384230 98 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 MTCO2P33-201ENST00000402100 465 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 RNA5SP498-201ENST00000411342 120 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC7.98□□□□□ -1.13
COL9A1P20849 FABP7P2-201ENST00000429946 379 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 Z98752.2-201ENST00000432727 312 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 PRPF38AP2-201ENST00000438179 851 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 UBE2V1P5-201ENST00000440070 405 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 SBDSP1-204ENST00000453858 737 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 RN7SL372P-201ENST00000461982 298 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC7.98□□□□□ -1.13
COL9A1P20849 RNY3P15-201ENST00000516297 97 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC7.98□□□□□ -1.13
COL9A1P20849 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 AC116348.2-201ENST00000563751 577 ntTSL 4 BASIC7.98□□□□□ -1.13
COL9A1P20849 AC126335.1-201ENST00000568414 510 ntTSL 2 BASIC7.98□□□□□ -1.13
COL9A1P20849 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC7.98□□□□□ -1.13
COL9A1P20849 MIR3154-201ENST00000577829 84 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 AC090312.2-201ENST00000582687 378 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 ACP5-208ENST00000590420 301 ntTSL 5 BASIC7.98□□□□□ -1.13
COL9A1P20849 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC7.98□□□□□ -1.13
COL9A1P20849 AC122710.3-201ENST00000606566 541 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 MIR8075-201ENST00000614354 80 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 CLEC19A-205ENST00000636231 561 ntAPPRIS P1 TSL 5 BASIC7.98□□□□□ -1.13
COL9A1P20849 ZNF708-201ENST00000356929 4004 ntAPPRIS P1 TSL 2 BASIC7.98□□□□□ -1.13
COL9A1P20849 PIWIL4-201ENST00000299001 3199 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC7.98□□□□□ -1.13
COL9A1P20849 AL158206.1-201ENST00000563205 1965 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 MICAL2-202ENST00000342902 3711 ntAPPRIS ALT2 TSL 2 BASIC7.98□□□□□ -1.13
COL9A1P20849 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 CDH13-202ENST00000428848 2195 ntAPPRIS ALT2 TSL 2 BASIC7.98□□□□□ -1.13
COL9A1P20849 TMEM182-203ENST00000412401 3593 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 MAGEC1-201ENST00000285879 4270 ntAPPRIS P2 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 LINC00501-201ENST00000425388 2046 ntTSL 2 BASIC7.98□□□□□ -1.13
COL9A1P20849 IL5RA-206ENST00000430514 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC7.98□□□□□ -1.13
COL9A1P20849 GJC1-201ENST00000330514 3295 ntAPPRIS P1 TSL 2 BASIC7.98□□□□□ -1.13
COL9A1P20849 APBB2-224ENST00000513140 4166 ntAPPRIS P3 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 ZNF791-201ENST00000343325 4554 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC7.98□□□□□ -1.13
COL9A1P20849 DDX50P1-201ENST00000438163 2400 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 CORIN-205ENST00000504584 2417 ntTSL 2 BASIC7.98□□□□□ -1.13
COL9A1P20849 DARS2-201ENST00000361951 3506 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 FAM193A-203ENST00000502458 4083 ntAPPRIS ALT2 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL9A1P20849 AL031595.3-201ENST00000624919 14262 ntBASIC7.98□□□□□ -1.13
COL9A1P20849 KIF23-202ENST00000352331 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 CD44-208ENST00000428726 3046 ntAPPRIS P3 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 AL049780.3-201ENST00000624612 1583 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 PLA2G4A-201ENST00000367466 2875 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 MAGEE1-201ENST00000361470 3630 ntAPPRIS P1 BASIC7.97□□□□□ -1.13
COL9A1P20849 LRRC49-203ENST00000443425 3085 ntTSL 2 BASIC7.97□□□□□ -1.13
COL9A1P20849 STAG3-219ENST00000620100 4203 ntAPPRIS ALT2 TSL 5 BASIC7.97□□□□□ -1.13
COL9A1P20849 ZNF182-201ENST00000376943 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 GRIA3-204ENST00000541091 2740 ntAPPRIS P5 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 NPIPB5-207ENST00000451409 3660 ntAPPRIS ALT2 TSL 5 BASIC7.97□□□□□ -1.13
COL9A1P20849 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 SYNPR-204ENST00000460711 2383 ntTSL 2 BASIC7.97□□□□□ -1.13
COL9A1P20849 KIF2C-201ENST00000372217 2955 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 MCM10-206ENST00000484800 3157 ntAPPRIS P4 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 MTTP-208ENST00000511045 3154 ntTSL 2 BASIC7.97□□□□□ -1.13
COL9A1P20849 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 LINC02275-201ENST00000508313 4365 ntTSL 2 BASIC7.97□□□□□ -1.13
COL9A1P20849 Y_RNA.80-201ENST00000362996 102 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 AC092634.1-201ENST00000366505 199 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 Y_RNA.414-201ENST00000384011 101 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 AL096800.1-201ENST00000405326 893 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 MIR1275-201ENST00000408770 80 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC7.97□□□□□ -1.13
COL9A1P20849 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC7.97□□□□□ -1.13
COL9A1P20849 AC019097.1-201ENST00000424783 735 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 HMGA1P4-201ENST00000428643 334 ntTSL 2 BASIC7.97□□□□□ -1.13
COL9A1P20849 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC7.97□□□□□ -1.13
COL9A1P20849 AL845321.1-201ENST00000444603 348 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC7.97□□□□□ -1.13
COL9A1P20849 AL034369.1-201ENST00000453808 477 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 TRBV5-4-201ENST00000454561 544 ntAPPRIS P1 BASIC7.97□□□□□ -1.13
COL9A1P20849 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC7.97□□□□□ -1.13
COL9A1P20849 RN7SL393P-201ENST00000463588 296 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 RN7SL149P-201ENST00000465197 281 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 GMFBP1-201ENST00000467831 427 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 AC009269.1-202ENST00000484381 469 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 HMGB3P17-201ENST00000504195 649 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC7.97□□□□□ -1.13
COL9A1P20849 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC7.97□□□□□ -1.13
COL9A1P20849 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC7.97□□□□□ -1.13
COL9A1P20849 DNM1P33-201ENST00000565222 270 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 AC069061.3-201ENST00000582254 823 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
COL9A1P20849 AL713866.2-201ENST00000603579 219 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 AC211486.5-201ENST00000616609 775 ntTSL 3 BASIC7.97□□□□□ -1.13
COL9A1P20849 uc_338.11-201ENST00000619132 160 ntBASIC7.97□□□□□ -1.13
COL9A1P20849 SNX18P12-201ENST00000624821 759 ntBASIC7.97□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 888.8 ms