Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MAP1A-202ENST00000382031 10553 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
COL6A3P12111 AC007688.1-201ENST00000475592 759 ntBASIC4.98□□□□□ -1.61
COL6A3P12111 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL6A3P12111 TRAV8-5-201ENST00000537369 341 ntBASIC4.98□□□□□ -1.61
COL6A3P12111 OR8B9P-202ENST00000642028 5216 ntBASIC4.98□□□□□ -1.61
COL6A3P12111 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC4.97□□□□□ -1.61
COL6A3P12111 KCNA2-214ENST00000640774 6673 ntTSL 5 BASIC4.97□□□□□ -1.61
COL6A3P12111 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC4.97□□□□□ -1.61
COL6A3P12111 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.97□□□□□ -1.61
COL6A3P12111 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC4.97□□□□□ -1.61
COL6A3P12111 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC4.97□□□□□ -1.61
COL6A3P12111 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.97□□□□□ -1.61
COL6A3P12111 PCDH15-233ENST00000621708 5700 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
COL6A3P12111 MUC3A-201ENST00000379458 11226 ntAPPRIS P2 TSL 5 BASIC4.97□□□□□ -1.61
COL6A3P12111 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC4.97□□□□□ -1.61
COL6A3P12111 SHROOM4-203ENST00000460112 8919 ntTSL 5 BASIC4.97□□□□□ -1.61
COL6A3P12111 AC011998.1-201ENST00000433403 117 ntBASIC4.97□□□□□ -1.61
COL6A3P12111 FTH1P16-201ENST00000435241 552 ntBASIC4.97□□□□□ -1.61
COL6A3P12111 AC097486.1-201ENST00000515331 210 ntBASIC4.97□□□□□ -1.61
COL6A3P12111 AC027369.5-201ENST00000533838 755 ntBASIC4.97□□□□□ -1.61
COL6A3P12111 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.97□□□□□ -1.61
COL6A3P12111 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.97□□□□□ -1.61
COL6A3P12111 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.97□□□□□ -1.61
COL6A3P12111 AC022726.1-201ENST00000587475 207 ntBASIC4.97□□□□□ -1.61
COL6A3P12111 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.97□□□□□ -1.61
COL6A3P12111 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC4.97□□□□□ -1.61
COL6A3P12111 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL6A3P12111 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL6A3P12111 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC4.97□□□□□ -1.61
COL6A3P12111 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
COL6A3P12111 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL6A3P12111 KIF1B-212ENST00000622724 8588 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL6A3P12111 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC4.97□□□□□ -1.61
COL6A3P12111 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.97□□□□□ -1.61
COL6A3P12111 RNU1-24P-201ENST00000364285 165 ntBASIC4.97□□□□□ -1.61
COL6A3P12111 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.97□□□□□ -1.61
COL6A3P12111 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.97□□□□□ -1.61
COL6A3P12111 FTH1P10-202ENST00000430907 550 ntBASIC4.97□□□□□ -1.61
COL6A3P12111 RPS17P8-201ENST00000434525 335 ntBASIC4.97□□□□□ -1.61
COL6A3P12111 ARAFP2-201ENST00000440565 559 ntBASIC4.97□□□□□ -1.61
COL6A3P12111 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL6A3P12111 BUD31P1-201ENST00000521828 359 ntBASIC4.97□□□□□ -1.61
COL6A3P12111 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC4.97□□□□□ -1.61
COL6A3P12111 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL6A3P12111 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.97□□□□□ -1.61
COL6A3P12111 AL159169.3-201ENST00000608871 561 ntBASIC4.97□□□□□ -1.61
COL6A3P12111 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.97□□□□□ -1.61
COL6A3P12111 AC073346.2-201ENST00000624724 2058 ntBASIC4.97□□□□□ -1.61
COL6A3P12111 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL6A3P12111 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL6A3P12111 LRP1-201ENST00000243077 14897 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL6A3P12111 AL031651.1-201ENST00000615357 1438 ntBASIC4.97□□□□□ -1.61
COL6A3P12111 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC4.97□□□□□ -1.61
COL6A3P12111 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL6A3P12111 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.96□□□□□ -1.61
COL6A3P12111 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.96□□□□□ -1.61
COL6A3P12111 ZKSCAN1-201ENST00000324306 9418 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
COL6A3P12111 ZNF217-201ENST00000302342 5633 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
COL6A3P12111 AC015813.3-201ENST00000584805 6113 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
COL6A3P12111 AL357515.1-201ENST00000402967 542 ntBASIC4.96□□□□□ -1.61
COL6A3P12111 NOP56P2-201ENST00000447491 769 ntBASIC4.96□□□□□ -1.61
COL6A3P12111 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.96□□□□□ -1.61
COL6A3P12111 AL049873.1-201ENST00000480540 376 ntBASIC4.96□□□□□ -1.61
COL6A3P12111 AC006499.5-201ENST00000505037 514 ntBASIC4.96□□□□□ -1.61
COL6A3P12111 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC4.96□□□□□ -1.61
COL6A3P12111 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.96□□□□□ -1.61
COL6A3P12111 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.96□□□□□ -1.61
COL6A3P12111 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.96□□□□□ -1.61
COL6A3P12111 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.96□□□□□ -1.61
COL6A3P12111 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.96□□□□□ -1.61
COL6A3P12111 AC011497.2-201ENST00000600255 639 ntBASIC4.96□□□□□ -1.61
COL6A3P12111 AL137843.1-201ENST00000605078 385 ntBASIC4.96□□□□□ -1.61
COL6A3P12111 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC4.96□□□□□ -1.61
COL6A3P12111 PEG10-208ENST00000615790 6394 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
COL6A3P12111 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC4.96□□□□□ -1.62
COL6A3P12111 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.96□□□□□ -1.62
COL6A3P12111 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.96□□□□□ -1.62
COL6A3P12111 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.96□□□□□ -1.62
COL6A3P12111 AC000111.2-201ENST00000448200 210 ntBASIC4.96□□□□□ -1.62
COL6A3P12111 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.96□□□□□ -1.62
COL6A3P12111 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.96□□□□□ -1.62
COL6A3P12111 AC004069.2-201ENST00000505438 1114 ntBASIC4.96□□□□□ -1.62
COL6A3P12111 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.96□□□□□ -1.62
COL6A3P12111 AC010680.3-201ENST00000604215 520 ntBASIC4.96□□□□□ -1.62
COL6A3P12111 AC015967.1-201ENST00000619893 476 ntBASIC4.96□□□□□ -1.62
COL6A3P12111 MVP-219ENST00000629059 120 ntTSL 5 BASIC4.96□□□□□ -1.62
COL6A3P12111 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.96□□□□□ -1.62
COL6A3P12111 ZNF840P-201ENST00000504759 1996 ntBASIC4.96□□□□□ -1.62
COL6A3P12111 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL6A3P12111 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC4.96□□□□□ -1.62
COL6A3P12111 AL929601.4-201ENST00000613011 1341 ntBASIC4.96□□□□□ -1.62
COL6A3P12111 ATXN1-201ENST00000244769 10602 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL6A3P12111 ABCA4-201ENST00000370225 7309 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL6A3P12111 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL6A3P12111 RN7SKP74-201ENST00000362849 309 ntBASIC4.96□□□□□ -1.62
COL6A3P12111 SNORD56.6-201ENST00000384569 71 ntBASIC4.96□□□□□ -1.62
COL6A3P12111 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.96□□□□□ -1.62
COL6A3P12111 AP003730.1-201ENST00000524605 285 ntBASIC4.96□□□□□ -1.62
COL6A3P12111 PSMB7P1-201ENST00000556349 514 ntBASIC4.96□□□□□ -1.62
COL6A3P12111 AC006116.5-201ENST00000591936 559 ntBASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms