RNA–Protein interactions for RNA: ENST00000460112.3

SHROOM4-203, Transcript of shroom family member 4, humanhuman

TSL 5 BASIC

Gene SHROOM4, Length 8,919 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4-203ENST00000460112 DCAF8L2P0C7V8 631 aa14.7□□□□□ -0.06
SHROOM4-203ENST00000460112 PELP1Q8IZL8 1130 aaKnown RBP14.5□□□□□ -0.09
SHROOM4-203ENST00000460112 MYT1Q01538 1121 aa14.23□□□□□ -0.13
SHROOM4-203ENST00000460112 NISCHQ9Y2I1 1504 aa14.18□□□□□ -0.14
SHROOM4-203ENST00000460112 FAM9AQ8IZU1 332 aaPredicted RBP14.03□□□□□ -0.16
SHROOM4-203ENST00000460112 APLP2Q06481 763 aa13.91□□□□□ -0.18
SHROOM4-203ENST00000460112 SUPT5HO00267 1087 aaKnown RBP13.83□□□□□ -0.2
SHROOM4-203ENST00000460112 CCER1Q8TC90 406 aaPredicted RBP13.8□□□□□ -0.2
SHROOM4-203ENST00000460112 ERICH6Q7L0X2 663 aa13.67□□□□□ -0.22
SHROOM4-203ENST00000460112 ZEB1P37275 1124 aaPredicted RBP13.58□□□□□ -0.24
SHROOM4-203ENST00000460112 CENPBP07199 599 aaPredicted RBP13.48□□□□□ -0.25
SHROOM4-203ENST00000460112 SHROOM4Q9ULL8 1493 aa13.45□□□□□ -0.26
SHROOM4-203ENST00000460112 EHMT2Q96KQ7 1210 aa13.41□□□□□ -0.26
SHROOM4-203ENST00000460112 TTBK1Q5TCY1 1321 aaPredicted RBP13.35□□□□□ -0.27
SHROOM4-203ENST00000460112 NEFLP07196 543 aa13.33□□□□□ -0.28
SHROOM4-203ENST00000460112 YTHDC1Q96MU7 727 aaKnown RBP13.21□□□□□ -0.29
SHROOM4-203ENST00000460112 DAXXQ9UER7 740 aaPredicted RBP13.15□□□□□ -0.3
SHROOM4-203ENST00000460112 PCGF6Q9BYE7 350 aa13.1□□□□□ -0.31
SHROOM4-203ENST00000460112 ATP1B4Q9UN42 357 aaPredicted RBP13.09□□□□□ -0.31
SHROOM4-203ENST00000460112 TRIM41Q8WV44 630 aa12.99□□□□□ -0.33
SHROOM4-203ENST00000460112 RANGAP1P46060 587 aaPredicted RBP12.96□□□□□ -0.33
SHROOM4-203ENST00000460112 UBTFP17480 764 aaKnown RBP12.96□□□□□ -0.33
SHROOM4-203ENST00000460112 MYT1LQ9UL68 1186 aa12.83□□□□□ -0.35
SHROOM4-203ENST00000460112 ZNF316A6NFI3 1004 aaPredicted RBP12.79□□□□□ -0.36
SHROOM4-203ENST00000460112 TRIM26Q12899 539 aaPredicted RBP12.74□□□□□ -0.37
SHROOM4-203ENST00000460112 RTL5Q5HYW3 569 aaPredicted RBP12.72□□□□□ -0.37
SHROOM4-203ENST00000460112 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.69□□□□□ -0.38
SHROOM4-203ENST00000460112 HNRNPUL2Q1KMD3 747 aaKnown RBP12.69□□□□□ -0.38
SHROOM4-203ENST00000460112 POLR3GLQ9BT43 218 aa12.64□□□□□ -0.39
SHROOM4-203ENST00000460112 CLSPNQ9HAW4 1339 aa12.64□□□□□ -0.39
SHROOM4-203ENST00000460112 SLC4A1APQ9BWU0 796 aaKnown RBP12.6□□□□□ -0.39
SHROOM4-203ENST00000460112 HRCP23327 699 aa12.58□□□□□ -0.4
SHROOM4-203ENST00000460112 ZBTB47Q9UFB7 747 aaPredicted RBP12.58□□□□□ -0.4
SHROOM4-203ENST00000460112 GLIPR1L2Q4G1C9 344 aa12.52□□□□□ -0.41
SHROOM4-203ENST00000460112 ITGAEP38570 1179 aa12.46□□□□□ -0.41
SHROOM4-203ENST00000460112 CHIC1Q5VXU3 224 aa12.44□□□□□ -0.42
SHROOM4-203ENST00000460112 NEFMP07197 916 aa12.43□□□□□ -0.42
SHROOM4-203ENST00000460112 CANXP27824 592 aaKnown RBP12.34□□□□□ -0.43
SHROOM4-203ENST00000460112 CCDC180Q9P1Z9 1646 aa12.31□□□□□ -0.44
SHROOM4-203ENST00000460112 CNGB1Q14028 1251 aaPredicted RBP12.29□□□□□ -0.44
SHROOM4-203ENST00000460112 PPARGC1BQ86YN6 1023 aaKnown RBP12.29□□□□□ -0.44
SHROOM4-203ENST00000460112 ANP32BQ92688 251 aaKnown RBP12.28□□□□□ -0.44
SHROOM4-203ENST00000460112 CDK11AQ9UQ88 783 aaPredicted RBP12.27□□□□□ -0.44
SHROOM4-203ENST00000460112 TRIM52Q96A61 297 aa12.27□□□□□ -0.45
SHROOM4-203ENST00000460112 EIF5BO60841 1220 aaKnown RBP12.27□□□□□ -0.45
SHROOM4-203ENST00000460112 FAM50AQ14320 339 aaKnown RBP12.25□□□□□ -0.45
SHROOM4-203ENST00000460112 ANP32CO43423 234 aa12.25□□□□□ -0.45
SHROOM4-203ENST00000460112 DIEXFQ68CQ4 756 aaKnown RBP12.23□□□□□ -0.45
SHROOM4-203ENST00000460112 SLC24A1O60721 1099 aa12.22□□□□□ -0.45
SHROOM4-203ENST00000460112 ACIN1Q9UKV3 1341 aaKnown RBP12.19□□□□□ -0.46
SHROOM4-203ENST00000460112 ANP32AP39687 249 aaKnown RBP12.18□□□□□ -0.46
SHROOM4-203ENST00000460112 BCANQ96GW7 911 aa12.16□□□□□ -0.46
SHROOM4-203ENST00000460112 GTF3C3Q9Y5Q9 886 aa12.14□□□□□ -0.47
SHROOM4-203ENST00000460112 DCAF1Q9Y4B6 1507 aa12.14□□□□□ -0.47
SHROOM4-203ENST00000460112 UPF2Q9HAU5 1272 aaKnown RBP12.12□□□□□ -0.47
SHROOM4-203ENST00000460112 ZNF326Q5BKZ1 582 aaKnown RBP12.11□□□□□ -0.47
SHROOM4-203ENST00000460112 ESF1Q9H501 851 aaKnown RBP12.11□□□□□ -0.47
SHROOM4-203ENST00000460112 HSP90AA1P07900 732 aaKnown RBP12.1□□□□□ -0.47
SHROOM4-203ENST00000460112 CDK11BP21127 795 aaKnown RBP12.09□□□□□ -0.47
SHROOM4-203ENST00000460112 NEUROD1Q13562 356 aa12.07□□□□□ -0.48
SHROOM4-203ENST00000460112 BCL11AQ9H165 835 aa11.97□□□□□ -0.49
SHROOM4-203ENST00000460112 FBLN2P98095 1184 aa11.96□□□□□ -0.49
SHROOM4-203ENST00000460112 STAG3Q9UJ98 1225 aa11.95□□□□□ -0.5
SHROOM4-203ENST00000460112 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.93□□□□□ -0.5
SHROOM4-203ENST00000460112 ANP32EQ9BTT0 268 aa11.92□□□□□ -0.5
SHROOM4-203ENST00000460112 MYH16Q9H6N6 1097 aa11.91□□□□□ -0.5
SHROOM4-203ENST00000460112 LOC105371045A0A1W2PR82 267 aa11.9□□□□□ -0.5
SHROOM4-203ENST00000460112 TNNT2P45379 298 aaPredicted RBP11.89□□□□□ -0.51
SHROOM4-203ENST00000460112 TONSLQ96HA7 1378 aa11.86□□□□□ -0.51
SHROOM4-203ENST00000460112 EEA1Q15075 1411 aa11.86□□□□□ -0.51
SHROOM4-203ENST00000460112 NPM2Q86SE8 214 aaKnown RBP11.85□□□□□ -0.51
SHROOM4-203ENST00000460112 NPM1P06748 294 aaKnown RBP eCLIP11.85□□□□□ -0.51
SHROOM4-203ENST00000460112 ZNF777Q9ULD5 760 aaPredicted RBP11.81□□□□□ -0.52
SHROOM4-203ENST00000460112 NCLP19338 710 aaKnown RBP11.8□□□□□ -0.52
SHROOM4-203ENST00000460112 ZCCHC6Q5VYS8 1495 aaKnown RBP11.8□□□□□ -0.52
SHROOM4-203ENST00000460112 WDR43Q15061 677 aaKnown RBP eCLIP11.78□□□□□ -0.52
SHROOM4-203ENST00000460112 ABCC9O60706 1549 aa11.78□□□□□ -0.52
SHROOM4-203ENST00000460112 ZRSR1Q15695 479 aaKnown RBP11.76□□□□□ -0.53
SHROOM4-203ENST00000460112 GOLGA6L22H0YM25 854 aa11.76□□□□□ -0.53
SHROOM4-203ENST00000460112 BECN1Q14457 450 aa11.76□□□□□ -0.53
SHROOM4-203ENST00000460112 CASC1Q6TDU7 716 aa11.74□□□□□ -0.53
SHROOM4-203ENST00000460112 CHGAP10645 457 aaKnown RBP11.74□□□□□ -0.53
SHROOM4-203ENST00000460112 DDRGK1Q96HY6 314 aa11.73□□□□□ -0.53
SHROOM4-203ENST00000460112 NBR1Q14596 966 aa11.72□□□□□ -0.53
SHROOM4-203ENST00000460112 PABPN1Q86U42 306 aaKnown RBP eCLIP11.7□□□□□ -0.54
SHROOM4-203ENST00000460112 GOLGA6L6A8MZA4 724 aa11.7□□□□□ -0.54
SHROOM4-203ENST00000460112 CCDC136Q96JN2 1154 aa11.7□□□□□ -0.54
SHROOM4-203ENST00000460112 TMC1Q8TDI8 760 aa11.69□□□□□ -0.54
SHROOM4-203ENST00000460112 TRIM44Q96DX7 344 aaPredicted RBP11.68□□□□□ -0.54
SHROOM4-203ENST00000460112 SCAF1Q9H7N4 1312 aaKnown RBP11.68□□□□□ -0.54
SHROOM4-203ENST00000460112 HNRNPUQ00839 825 aaKnown RBP eCLIP11.67□□□□□ -0.54
SHROOM4-203ENST00000460112 CSRNP3Q8WYN3 585 aa11.65□□□□□ -0.54
SHROOM4-203ENST00000460112 ARID3CA6NKF2 412 aa11.64□□□□□ -0.55
SHROOM4-203ENST00000460112 FKBP8Q14318 412 aa11.64□□□□□ -0.55
SHROOM4-203ENST00000460112 CHMP4BQ9H444 224 aaKnown RBP11.63□□□□□ -0.55
SHROOM4-203ENST00000460112 A0A0G2JS52 829 aa11.62□□□□□ -0.55
SHROOM4-203ENST00000460112 PPP1R15AO75807 674 aaPredicted RBP11.62□□□□□ -0.55
SHROOM4-203ENST00000460112 P3H3Q8IVL6 736 aa11.62□□□□□ -0.55
SHROOM4-203ENST00000460112 NRDCO43847 1150 aa11.62□□□□□ -0.55
SHROOM4-203ENST00000460112 ERICH6BQ5W0A0 696 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms