Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RN7SKP34-201ENST00000516142 244 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 RNU6-889P-201ENST00000517189 103 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AC136777.2-201ENST00000522979 358 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 OR8Q1P-201ENST00000526467 655 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 CCDC58P1-201ENST00000578567 430 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 MTND3P19-201ENST00000603825 345 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AC122133.1-201ENST00000613964 233 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 CASC19-280ENST00000642102 1351 ntBASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC39Q9UFE4 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 NCOA4P2-201ENST00000340589 1813 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 RN7SKP151-201ENST00000410230 316 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 RN7SKP129-201ENST00000410288 299 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 MRPS21P5-201ENST00000417885 231 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 ELOCP10-201ENST00000440624 327 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 RPS19P6-201ENST00000441327 433 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 PTENP1-201ENST00000447117 1215 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AC092967.1-201ENST00000449016 481 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 RPL7P45-201ENST00000455851 743 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 HMGN1P10-201ENST00000474557 553 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AC068724.1-201ENST00000487100 792 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AC010343.2-201ENST00000510162 224 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 SNX18P25-201ENST00000510539 758 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AK6-204ENST00000512561 587 ntTSL 5 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AC130364.2-201ENST00000528639 604 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 MYL2-203ENST00000548438 664 ntTSL 3 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 BNIP3P33-201ENST00000598912 569 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AC079089.3-201ENST00000603094 673 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AC133552.5-201ENST00000604266 540 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 ELOCP34-201ENST00000604436 327 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AC073046.2-201ENST00000604756 527 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AC095031.1-201ENST00000623685 672 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AC116667.2-201ENST00000641075 823 ntBASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
CCDC39Q9UFE4 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 RNA5SP85-201ENST00000365378 119 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 VIM2P-201ENST00000402383 1294 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 RN7SKP273-201ENST00000411392 314 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 RPL7AP14-201ENST00000424041 802 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC114755.5-201ENST00000447760 831 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 CEACAMP11-201ENST00000455211 583 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AMD1P1-201ENST00000457220 922 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC005410.1-202ENST00000460347 485 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 HMGB1P36-201ENST00000487709 576 ntBASIC7.15□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms