Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SKA3Q8IX90 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SKA3Q8IX90 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SKA3Q8IX90 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SKA3Q8IX90 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SKA3Q8IX90 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 CASC19-221ENST00000641309 1382 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 MIR1271-201ENST00000408537 86 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 RN7SKP59-201ENST00000410520 314 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 MTND4LP21-201ENST00000415303 295 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC017019.1-201ENST00000426129 261 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 GTF3AP5-201ENST00000442645 697 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 SPRYD7P1-201ENST00000443861 570 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC021660.1-201ENST00000465006 554 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 AL133445.1-201ENST00000467051 452 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 RN7SL447P-201ENST00000494711 245 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 RPEP1-201ENST00000504507 658 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 RPL7L1P4-201ENST00000513004 707 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 BX510359.5-201ENST00000515651 304 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 HMGB1P19-201ENST00000517578 577 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 CDC42P3-201ENST00000518493 633 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 AP006245.2-201ENST00000522004 300 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 YWHABP2-201ENST00000540201 713 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC126177.5-201ENST00000549599 178 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SKA3Q8IX90 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC136428.4-201ENST00000634254 1155 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC027279.1-201ENST00000568885 4284 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SKA3Q8IX90 AL034370.1-201ENST00000397254 1590 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 DDX18P6-201ENST00000450119 1997 ntBASIC4.69□□□□□ -1.66
SKA3Q8IX90 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SKA3Q8IX90 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SKA3Q8IX90 AC079298.1-201ENST00000625026 1619 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.68□□□□□ -1.66
SKA3Q8IX90 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SKA3Q8IX90 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 AL138820.1-201ENST00000617901 5305 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 RN7SKP162-201ENST00000363605 345 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 RNA5SP339-201ENST00000390987 122 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SKA3Q8IX90 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 AC079355.1-201ENST00000421770 223 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 RPL7L1P9-201ENST00000431298 745 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 CFL1P1-202ENST00000432948 411 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 RPS26P41-201ENST00000450370 284 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 AC104849.1-201ENST00000462623 405 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 RN7SL423P-201ENST00000486202 304 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SKA3Q8IX90 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SKA3Q8IX90 CCNHP1-201ENST00000513311 678 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SKA3Q8IX90 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 SMARCE1P3-201ENST00000553649 1231 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 AP000919.1-201ENST00000582850 985 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 FKBP1AP1-201ENST00000594588 318 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 WBP1LP8-201ENST00000617401 327 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 MIR6729-201ENST00000618194 65 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 AC074101.1-201ENST00000637861 241 ntBASIC4.68□□□□□ -1.66
SKA3Q8IX90 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SKA3Q8IX90 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC4.68□□□□□ -1.66
SKA3Q8IX90 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 166.2 ms