Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC4.81□□□□□ -1.64
FOXA1P55317 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
FOXA1P55317 AC095055.1-201ENST00000603472 1113 ntBASIC4.81□□□□□ -1.64
FOXA1P55317 IMMP1LP3-201ENST00000604197 224 ntBASIC4.81□□□□□ -1.64
FOXA1P55317 MIR6729-201ENST00000618194 65 ntBASIC4.81□□□□□ -1.64
FOXA1P55317 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC4.81□□□□□ -1.64
FOXA1P55317 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.81□□□□□ -1.64
FOXA1P55317 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.81□□□□□ -1.64
FOXA1P55317 AC020633.1-201ENST00000468439 2247 ntBASIC4.81□□□□□ -1.64
FOXA1P55317 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
FOXA1P55317 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
FOXA1P55317 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
FOXA1P55317 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
FOXA1P55317 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
FOXA1P55317 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.8□□□□□ -1.64
FOXA1P55317 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.8□□□□□ -1.64
FOXA1P55317 AL731566.1-201ENST00000620490 1937 ntBASIC4.8□□□□□ -1.64
FOXA1P55317 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
FOXA1P55317 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
FOXA1P55317 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
FOXA1P55317 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
FOXA1P55317 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.8□□□□□ -1.64
FOXA1P55317 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
FOXA1P55317 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
FOXA1P55317 AC008549.2-201ENST00000333482 706 ntBASIC4.8□□□□□ -1.64
FOXA1P55317 RN7SKP162-201ENST00000363605 345 ntBASIC4.8□□□□□ -1.64
FOXA1P55317 U3.25-201ENST00000391209 220 ntBASIC4.8□□□□□ -1.64
FOXA1P55317 AL078599.1-201ENST00000402075 293 ntBASIC4.8□□□□□ -1.64
FOXA1P55317 NPM1P4-201ENST00000414095 812 ntBASIC4.8□□□□□ -1.64
FOXA1P55317 CKS1BP6-201ENST00000424932 240 ntBASIC4.8□□□□□ -1.64
FOXA1P55317 AL121776.1-201ENST00000429337 372 ntBASIC4.8□□□□□ -1.64
FOXA1P55317 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.8□□□□□ -1.64
FOXA1P55317 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.8□□□□□ -1.64
FOXA1P55317 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC4.8□□□□□ -1.64
FOXA1P55317 AL354714.3-201ENST00000447284 493 ntBASIC4.8□□□□□ -1.64
FOXA1P55317 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.8□□□□□ -1.64
FOXA1P55317 RPS21P4-201ENST00000487122 248 ntBASIC4.8□□□□□ -1.64
FOXA1P55317 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.8□□□□□ -1.64
FOXA1P55317 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.8□□□□□ -1.64
FOXA1P55317 OR8A2P-201ENST00000528631 952 ntBASIC4.8□□□□□ -1.64
FOXA1P55317 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC4.8□□□□□ -1.64
FOXA1P55317 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.8□□□□□ -1.64
FOXA1P55317 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
FOXA1P55317 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.8□□□□□ -1.64
FOXA1P55317 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
FOXA1P55317 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC4.8□□□□□ -1.64
FOXA1P55317 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC4.8□□□□□ -1.64
FOXA1P55317 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.8□□□□□ -1.64
FOXA1P55317 AC087821.1-201ENST00000623639 567 ntBASIC4.8□□□□□ -1.64
FOXA1P55317 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.8□□□□□ -1.64
FOXA1P55317 HSPA8P14-201ENST00000552265 1805 ntBASIC4.8□□□□□ -1.64
FOXA1P55317 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
FOXA1P55317 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
FOXA1P55317 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
FOXA1P55317 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC4.8□□□□□ -1.64
FOXA1P55317 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
FOXA1P55317 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.8□□□□□ -1.64
FOXA1P55317 Z95331.1-201ENST00000623075 23112 ntBASIC4.8□□□□□ -1.64
FOXA1P55317 MRRFP1-201ENST00000435941 1675 ntBASIC4.8□□□□□ -1.64
FOXA1P55317 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
FOXA1P55317 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
FOXA1P55317 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
FOXA1P55317 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
FOXA1P55317 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
FOXA1P55317 AL138820.1-201ENST00000617901 5305 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 AMELX-201ENST00000348912 737 ntTSL 5 BASIC4.79□□□□□ -1.64
FOXA1P55317 NPM1P38-201ENST00000403835 865 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC4.79□□□□□ -1.64
FOXA1P55317 RGS17P1-201ENST00000423358 553 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 RPL34P6-201ENST00000432390 345 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 RHOT1P3-201ENST00000436571 331 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 KNOP1P3-201ENST00000446933 426 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC4.79□□□□□ -1.64
FOXA1P55317 RPL7P51-201ENST00000490532 749 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 BX510359.5-201ENST00000515651 304 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 IGKV2-18-201ENST00000522607 343 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.79□□□□□ -1.64
FOXA1P55317 EIF4A2P5-201ENST00000529914 499 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.79□□□□□ -1.64
FOXA1P55317 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.79□□□□□ -1.64
FOXA1P55317 EIF1P5-201ENST00000585002 234 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.79□□□□□ -1.64
FOXA1P55317 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC4.79□□□□□ -1.64
FOXA1P55317 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
FOXA1P55317 AL627230.1-201ENST00000613077 211 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 AL591926.8-201ENST00000616876 211 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 AC099494.2-201ENST00000623371 978 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 AL049767.1-202ENST00000637826 242 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 UOX-205ENST00000640983 544 ntTSL 4 BASIC4.79□□□□□ -1.64
FOXA1P55317 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
FOXA1P55317 SMG1P4-204ENST00000523028 4131 ntBASIC4.79□□□□□ -1.64
FOXA1P55317 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.79□□□□□ -1.64
FOXA1P55317 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.79□□□□□ -1.64
FOXA1P55317 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
FOXA1P55317 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
FOXA1P55317 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXA1P55317 ECM1P2-201ENST00000503354 1577 ntBASIC4.78□□□□□ -1.64
FOXA1P55317 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC4.78□□□□□ -1.64
FOXA1P55317 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms