Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.85□□□□□ -1.47
HMGCS2P54868 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
HMGCS2P54868 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.85□□□□□ -1.47
HMGCS2P54868 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
HMGCS2P54868 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
HMGCS2P54868 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HMGCS2P54868 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
HMGCS2P54868 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HMGCS2P54868 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HMGCS2P54868 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.85□□□□□ -1.47
HMGCS2P54868 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HMGCS2P54868 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HMGCS2P54868 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HMGCS2P54868 SNORA2.3-201ENST00000383920 135 ntBASIC5.85□□□□□ -1.47
HMGCS2P54868 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HMGCS2P54868 SNORA77-201ENST00000408716 125 ntBASIC5.85□□□□□ -1.47
HMGCS2P54868 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC5.85□□□□□ -1.47
HMGCS2P54868 AC069213.2-201ENST00000420238 366 ntBASIC5.85□□□□□ -1.47
HMGCS2P54868 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.85□□□□□ -1.47
HMGCS2P54868 GSTA7P-201ENST00000438425 448 ntBASIC5.85□□□□□ -1.47
HMGCS2P54868 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.85□□□□□ -1.47
HMGCS2P54868 TAAR4P-201ENST00000454843 1039 ntBASIC5.85□□□□□ -1.47
HMGCS2P54868 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
HMGCS2P54868 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HMGCS2P54868 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC5.85□□□□□ -1.47
HMGCS2P54868 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.85□□□□□ -1.47
HMGCS2P54868 HPRT1P1-201ENST00000509498 657 ntBASIC5.85□□□□□ -1.47
HMGCS2P54868 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.85□□□□□ -1.47
HMGCS2P54868 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.85□□□□□ -1.47
HMGCS2P54868 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC5.85□□□□□ -1.47
HMGCS2P54868 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.85□□□□□ -1.47
HMGCS2P54868 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC5.85□□□□□ -1.47
HMGCS2P54868 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.85□□□□□ -1.47
HMGCS2P54868 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.85□□□□□ -1.47
HMGCS2P54868 AL512782.1-201ENST00000603093 364 ntBASIC5.85□□□□□ -1.47
HMGCS2P54868 AC020910.3-201ENST00000603701 874 ntBASIC5.85□□□□□ -1.47
HMGCS2P54868 AC104687.2-201ENST00000604442 342 ntBASIC5.85□□□□□ -1.47
HMGCS2P54868 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HMGCS2P54868 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
HMGCS2P54868 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
HMGCS2P54868 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HMGCS2P54868 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.85□□□□□ -1.47
HMGCS2P54868 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
HMGCS2P54868 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.85□□□□□ -1.47
HMGCS2P54868 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HMGCS2P54868 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HMGCS2P54868 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
HMGCS2P54868 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HMGCS2P54868 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
HMGCS2P54868 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HMGCS2P54868 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
HMGCS2P54868 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HMGCS2P54868 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
HMGCS2P54868 RNA5SP223-201ENST00000365174 120 ntBASIC5.84□□□□□ -1.47
HMGCS2P54868 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
HMGCS2P54868 IL6-206ENST00000407492 926 ntTSL 3 BASIC5.84□□□□□ -1.47
HMGCS2P54868 RN7SKP100-201ENST00000411258 284 ntBASIC5.84□□□□□ -1.47
HMGCS2P54868 COX6CP17-201ENST00000421389 185 ntBASIC5.84□□□□□ -1.47
HMGCS2P54868 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.84□□□□□ -1.47
HMGCS2P54868 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
HMGCS2P54868 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.84□□□□□ -1.47
HMGCS2P54868 AC111000.6-201ENST00000514471 709 ntBASIC5.84□□□□□ -1.47
HMGCS2P54868 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC5.84□□□□□ -1.47
HMGCS2P54868 OR8Q1P-201ENST00000526467 655 ntBASIC5.84□□□□□ -1.47
HMGCS2P54868 AC130364.2-201ENST00000528639 604 ntBASIC5.84□□□□□ -1.47
HMGCS2P54868 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC5.84□□□□□ -1.47
HMGCS2P54868 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC5.84□□□□□ -1.47
HMGCS2P54868 AC068790.7-201ENST00000602347 528 ntBASIC5.84□□□□□ -1.47
HMGCS2P54868 AL137246.1-201ENST00000607072 977 ntBASIC5.84□□□□□ -1.47
HMGCS2P54868 AC012414.7-202ENST00000622705 1090 ntBASIC5.84□□□□□ -1.47
HMGCS2P54868 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.84□□□□□ -1.47
HMGCS2P54868 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.84□□□□□ -1.47
HMGCS2P54868 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
HMGCS2P54868 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.48
HMGCS2P54868 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HMGCS2P54868 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.83□□□□□ -1.48
HMGCS2P54868 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
HMGCS2P54868 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.83□□□□□ -1.48
HMGCS2P54868 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HMGCS2P54868 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.83□□□□□ -1.48
HMGCS2P54868 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.83□□□□□ -1.48
HMGCS2P54868 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
HMGCS2P54868 RNU6-316P-201ENST00000391027 107 ntBASIC5.83□□□□□ -1.48
HMGCS2P54868 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC5.83□□□□□ -1.48
HMGCS2P54868 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.83□□□□□ -1.48
HMGCS2P54868 AC068287.1-201ENST00000430283 295 ntBASIC5.83□□□□□ -1.48
HMGCS2P54868 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.83□□□□□ -1.48
HMGCS2P54868 OR1H1P-201ENST00000448731 937 ntBASIC5.83□□□□□ -1.48
HMGCS2P54868 AC114982.2-201ENST00000461396 358 ntBASIC5.83□□□□□ -1.48
HMGCS2P54868 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC5.83□□□□□ -1.48
HMGCS2P54868 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC5.83□□□□□ -1.48
HMGCS2P54868 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.83□□□□□ -1.48
HMGCS2P54868 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC5.83□□□□□ -1.48
HMGCS2P54868 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HMGCS2P54868 AP001880.2-201ENST00000538233 448 ntBASIC5.83□□□□□ -1.48
HMGCS2P54868 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HMGCS2P54868 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.83□□□□□ -1.48
HMGCS2P54868 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.83□□□□□ -1.48
HMGCS2P54868 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC5.83□□□□□ -1.48
HMGCS2P54868 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms