Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MAL2-201ENST00000522112 573 ntTSL 4 BASIC6.18□□□□□ -1.42
COL5A3P25940 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC6.18□□□□□ -1.42
COL5A3P25940 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC6.18□□□□□ -1.42
COL5A3P25940 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC6.18□□□□□ -1.42
COL5A3P25940 AC022884.2-201ENST00000578535 580 ntBASIC6.18□□□□□ -1.42
COL5A3P25940 AC007497.1-201ENST00000610421 561 ntBASIC6.18□□□□□ -1.42
COL5A3P25940 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC6.18□□□□□ -1.42
COL5A3P25940 MAPK10-371ENST00000641952 5209 ntBASIC6.18□□□□□ -1.42
COL5A3P25940 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL5A3P25940 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL5A3P25940 AC093671.1-201ENST00000624981 2929 ntBASIC6.18□□□□□ -1.42
COL5A3P25940 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
COL5A3P25940 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC6.18□□□□□ -1.42
COL5A3P25940 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC6.18□□□□□ -1.42
COL5A3P25940 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
COL5A3P25940 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.17□□□□□ -1.42
COL5A3P25940 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL5A3P25940 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL5A3P25940 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL5A3P25940 RNU1-82P-201ENST00000390851 165 ntBASIC6.17□□□□□ -1.42
COL5A3P25940 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
COL5A3P25940 AL357515.1-201ENST00000402967 542 ntBASIC6.17□□□□□ -1.42
COL5A3P25940 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
COL5A3P25940 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC6.17□□□□□ -1.42
COL5A3P25940 AC093824.1-201ENST00000508796 343 ntBASIC6.17□□□□□ -1.42
COL5A3P25940 AP001781.1-201ENST00000530977 207 ntBASIC6.17□□□□□ -1.42
COL5A3P25940 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC6.17□□□□□ -1.42
COL5A3P25940 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL5A3P25940 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC6.17□□□□□ -1.42
COL5A3P25940 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
COL5A3P25940 AC067959.1-201ENST00000604334 379 ntBASIC6.17□□□□□ -1.42
COL5A3P25940 AC009951.1-201ENST00000623674 2614 ntBASIC6.17□□□□□ -1.42
COL5A3P25940 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL5A3P25940 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.17□□□□□ -1.42
COL5A3P25940 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL5A3P25940 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL5A3P25940 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL5A3P25940 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC6.17□□□□□ -1.42
COL5A3P25940 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC6.17□□□□□ -1.42
COL5A3P25940 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A3P25940 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A3P25940 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC6.16□□□□□ -1.42
COL5A3P25940 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC6.16□□□□□ -1.42
COL5A3P25940 TEX41-206ENST00000432608 661 ntTSL 3 BASIC6.16□□□□□ -1.42
COL5A3P25940 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC6.16□□□□□ -1.42
COL5A3P25940 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC6.16□□□□□ -1.42
COL5A3P25940 BUD31P1-201ENST00000521828 359 ntBASIC6.16□□□□□ -1.42
COL5A3P25940 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC6.16□□□□□ -1.42
COL5A3P25940 AL121890.3-201ENST00000618494 516 ntBASIC6.16□□□□□ -1.42
COL5A3P25940 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC6.16□□□□□ -1.42
COL5A3P25940 SOCS5P3-201ENST00000425115 1576 ntBASIC6.16□□□□□ -1.42
COL5A3P25940 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC6.16□□□□□ -1.42
COL5A3P25940 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A3P25940 ZFRP1-201ENST00000457579 2970 ntBASIC6.16□□□□□ -1.42
COL5A3P25940 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A3P25940 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC6.16□□□□□ -1.42
COL5A3P25940 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A3P25940 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.16□□□□□ -1.42
COL5A3P25940 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A3P25940 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A3P25940 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC6.16□□□□□ -1.42
COL5A3P25940 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC6.16□□□□□ -1.42
COL5A3P25940 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.16□□□□□ -1.42
COL5A3P25940 PRNCR1-201ENST00000635449 12727 ntBASIC6.16□□□□□ -1.42
COL5A3P25940 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC6.16□□□□□ -1.42
COL5A3P25940 IGKV7-3-201ENST00000357453 298 ntBASIC6.16□□□□□ -1.42
COL5A3P25940 RNU4-39P-201ENST00000362455 127 ntBASIC6.16□□□□□ -1.42
COL5A3P25940 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
COL5A3P25940 RPL7AP52-201ENST00000458096 790 ntBASIC6.16□□□□□ -1.42
COL5A3P25940 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
COL5A3P25940 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC6.16□□□□□ -1.42
COL5A3P25940 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC6.16□□□□□ -1.42
COL5A3P25940 AL356218.2-201ENST00000605264 187 ntBASIC6.16□□□□□ -1.42
COL5A3P25940 AC068733.2-201ENST00000605434 1418 ntBASIC6.16□□□□□ -1.42
COL5A3P25940 AL162574.1-201ENST00000615702 950 ntBASIC6.16□□□□□ -1.42
COL5A3P25940 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC6.16□□□□□ -1.42
COL5A3P25940 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A3P25940 MIR6830-201ENST00000636015 70 ntBASIC6.16□□□□□ -1.42
COL5A3P25940 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
COL5A3P25940 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL5A3P25940 TLK1P1-201ENST00000456760 2440 ntBASIC6.16□□□□□ -1.42
COL5A3P25940 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A3P25940 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC6.15□□□□□ -1.42
COL5A3P25940 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A3P25940 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC6.15□□□□□ -1.42
COL5A3P25940 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
COL5A3P25940 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.15□□□□□ -1.42
COL5A3P25940 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
COL5A3P25940 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A3P25940 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
COL5A3P25940 AC009643.2-201ENST00000603543 1448 ntBASIC6.15□□□□□ -1.42
COL5A3P25940 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A3P25940 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL5A3P25940 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC6.15□□□□□ -1.42
COL5A3P25940 MIR1193-201ENST00000408109 78 ntBASIC6.15□□□□□ -1.42
COL5A3P25940 AL450023.3-201ENST00000440592 271 ntBASIC6.15□□□□□ -1.42
COL5A3P25940 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC6.15□□□□□ -1.42
COL5A3P25940 AC025164.1-201ENST00000496249 478 ntBASIC6.15□□□□□ -1.42
COL5A3P25940 AC093840.1-201ENST00000511599 336 ntBASIC6.15□□□□□ -1.42
COL5A3P25940 CYCSP29-201ENST00000533731 318 ntBASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms