Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC005297.1-201ENST00000444765 862 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC6.62□□□□□ -1.35
COL6A1P12109 AC092967.1-201ENST00000449016 481 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC6.62□□□□□ -1.35
COL6A1P12109 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL6A1P12109 CBX1P5-201ENST00000475330 559 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC6.62□□□□□ -1.35
COL6A1P12109 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC6.62□□□□□ -1.35
COL6A1P12109 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC6.62□□□□□ -1.35
COL6A1P12109 MTCO1P31-201ENST00000506355 492 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC6.62□□□□□ -1.35
COL6A1P12109 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC6.62□□□□□ -1.35
COL6A1P12109 RNA5SP400-201ENST00000517155 111 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC6.62□□□□□ -1.35
COL6A1P12109 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC6.62□□□□□ -1.35
COL6A1P12109 PTS-202ENST00000524931 696 ntTSL 3 BASIC6.62□□□□□ -1.35
COL6A1P12109 HMGB1P42-201ENST00000532126 553 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 ASB8-202ENST00000535055 657 ntTSL 2 BASIC6.62□□□□□ -1.35
COL6A1P12109 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC6.62□□□□□ -1.35
COL6A1P12109 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC6.62□□□□□ -1.35
COL6A1P12109 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC6.62□□□□□ -1.35
COL6A1P12109 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC6.62□□□□□ -1.35
COL6A1P12109 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 HMGB1P51-201ENST00000605166 638 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 AC099785.1-201ENST00000605697 437 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 AL445222.1-201ENST00000607259 628 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 RPSAP73-201ENST00000614820 330 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL6A1P12109 AL035461.2-201ENST00000619201 524 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC6.62□□□□□ -1.35
COL6A1P12109 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL6A1P12109 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC6.62□□□□□ -1.35
COL6A1P12109 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
COL6A1P12109 LCOR-201ENST00000286067 4542 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL6A1P12109 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC6.62□□□□□ -1.35
COL6A1P12109 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL6A1P12109 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC6.62□□□□□ -1.35
COL6A1P12109 AL355377.1-201ENST00000621125 1653 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC6.61□□□□□ -1.35
COL6A1P12109 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
COL6A1P12109 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL6A1P12109 AC093536.2-201ENST00000565257 1406 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL6A1P12109 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
COL6A1P12109 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL6A1P12109 PARP4P2-201ENST00000446672 3326 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL6A1P12109 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.61□□□□□ -1.35
COL6A1P12109 AC096921.2-201ENST00000561507 1916 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 OR5H2-201ENST00000355273 945 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
COL6A1P12109 RNA5SP375-201ENST00000362975 119 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 RNU5B-4P-201ENST00000363508 111 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 RNA5SP507-201ENST00000363603 121 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL6A1P12109 Y_RNA.505-201ENST00000384489 102 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL6A1P12109 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC6.61□□□□□ -1.35
COL6A1P12109 RN7SKP273-201ENST00000411392 314 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC6.61□□□□□ -1.35
COL6A1P12109 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC6.61□□□□□ -1.35
COL6A1P12109 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC6.61□□□□□ -1.35
COL6A1P12109 AC093084.1-201ENST00000424233 687 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 OSTCP5-201ENST00000425293 453 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AL022331.1-201ENST00000429025 477 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC6.61□□□□□ -1.35
COL6A1P12109 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC6.61□□□□□ -1.35
COL6A1P12109 FABP5P2-201ENST00000439042 408 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 ARF4P4-201ENST00000439608 520 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AC044797.1-201ENST00000445744 679 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC6.61□□□□□ -1.35
COL6A1P12109 AL645937.3-201ENST00000453647 936 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AC093166.4-201ENST00000457867 318 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC6.61□□□□□ -1.35
COL6A1P12109 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC6.61□□□□□ -1.35
COL6A1P12109 TPT1P3-201ENST00000492841 512 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AC026782.2-201ENST00000510845 636 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AC021193.1-201ENST00000511607 420 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC6.61□□□□□ -1.35
COL6A1P12109 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC6.61□□□□□ -1.35
COL6A1P12109 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC6.61□□□□□ -1.35
COL6A1P12109 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC6.61□□□□□ -1.35
COL6A1P12109 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL6A1P12109 OR4A17P-201ENST00000526032 904 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC6.61□□□□□ -1.35
COL6A1P12109 HIGD1AP5-201ENST00000529959 259 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 LRRC6P1-201ENST00000532188 885 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC6.61□□□□□ -1.35
COL6A1P12109 AC018558.5-201ENST00000565840 952 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC6.61□□□□□ -1.35
COL6A1P12109 MIR4675-201ENST00000577898 77 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 NBR2-204ENST00000587322 63 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC6.61□□□□□ -1.35
COL6A1P12109 Mico1.1-201ENST00000611698 204 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 HULC.1-201ENST00000612720 240 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AC068870.2-201ENST00000620635 389 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 MIR6837-201ENST00000620884 64 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AP002782.1-201ENST00000623107 614 ntBASIC6.61□□□□□ -1.35
COL6A1P12109 AC092184.1-201ENST00000625042 715 ntBASIC6.61□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms