Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
SHANK3Q9BYB0 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC6.46□□□□□ -1.37
SHANK3Q9BYB0 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.37
SHANK3Q9BYB0 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 AL136116.2-201ENST00000404020 785 ntBASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 AC017019.1-201ENST00000426129 261 ntBASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 HMGB1P4-201ENST00000455362 567 ntBASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 AC109327.1-201ENST00000471666 403 ntBASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 AP003080.1-202ENST00000526526 915 ntBASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 AC008782.1-201ENST00000603386 430 ntBASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 AC006133.1-201ENST00000617106 264 ntBASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 AC097063.1-201ENST00000426714 1797 ntBASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 AC099654.2-201ENST00000433031 1980 ntBASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SHANK3Q9BYB0 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 MIR129-1-201ENST00000384972 72 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 AL035079.1-201ENST00000405210 287 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 RPS27AP12-201ENST00000429552 465 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 SCAND3P1-201ENST00000439854 1060 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 OR1H1P-201ENST00000448731 937 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 RPL7P32-201ENST00000457119 744 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 AC104971.1-201ENST00000495117 578 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 AC090058.1-201ENST00000498788 435 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 AC017079.1-201ENST00000333650 415 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 RNU6-525P-201ENST00000363685 104 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 RNA5SP447-201ENST00000363749 119 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 RNA5SP223-201ENST00000365174 120 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 AL021331.1-201ENST00000402817 582 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 CENPIP1-201ENST00000425713 902 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 RPL7AP49-201ENST00000429522 581 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 AL591438.1-201ENST00000433508 581 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 CDV3-208ENST00000511392 554 ntTSL 5 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 RN7SL802P-201ENST00000577858 299 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 AC020915.5-201ENST00000596836 964 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 MIR6853-201ENST00000619642 74 ntBASIC6.45□□□□□ -1.38
SHANK3Q9BYB0 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SHANK3Q9BYB0 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
SHANK3Q9BYB0 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC6.44□□□□□ -1.38
SHANK3Q9BYB0 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC6.44□□□□□ -1.38
SHANK3Q9BYB0 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
SHANK3Q9BYB0 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.44□□□□□ -1.38
SHANK3Q9BYB0 AC005831.1-201ENST00000624384 1697 ntBASIC6.44□□□□□ -1.38
SHANK3Q9BYB0 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC6.44□□□□□ -1.38
SHANK3Q9BYB0 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC6.44□□□□□ -1.38
SHANK3Q9BYB0 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SHANK3Q9BYB0 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
SHANK3Q9BYB0 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC6.44□□□□□ -1.38
SHANK3Q9BYB0 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC6.44□□□□□ -1.38
SHANK3Q9BYB0 TBCAP2-201ENST00000416175 326 ntBASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms