Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC6.64□□□□□ -1.35
COL6A1P12109 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL6A1P12109 AL034546.1-201ENST00000623740 3693 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 AL731556.1-201ENST00000394628 3711 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL6A1P12109 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC6.63□□□□□ -1.35
COL6A1P12109 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL6A1P12109 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL6A1P12109 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL6A1P12109 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL6A1P12109 RNU6-1251P-201ENST00000364502 107 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL6A1P12109 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.63□□□□□ -1.35
COL6A1P12109 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC6.63□□□□□ -1.35
COL6A1P12109 SNRPEP6-201ENST00000407465 277 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC6.63□□□□□ -1.35
COL6A1P12109 LSM5-206ENST00000409987 504 ntTSL 5 BASIC6.63□□□□□ -1.35
COL6A1P12109 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC6.63□□□□□ -1.35
COL6A1P12109 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL6A1P12109 AL139148.1-201ENST00000427122 680 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 AC097721.1-201ENST00000427150 1253 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 HMGB3P24-201ENST00000433260 622 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.63□□□□□ -1.35
COL6A1P12109 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC6.63□□□□□ -1.35
COL6A1P12109 MUPP-201ENST00000438111 566 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC6.63□□□□□ -1.35
COL6A1P12109 RPL12P3-201ENST00000440080 396 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 AL359265.1-201ENST00000440296 795 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 MTCO2P7-201ENST00000446518 666 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 AL359091.1-201ENST00000449048 1734 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 OR2AO1P-201ENST00000476497 403 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 RAP1BP2-201ENST00000478270 544 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 RN7SL547P-201ENST00000490793 290 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 AC083795.1-201ENST00000491760 320 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL6A1P12109 HIGD1AP14-201ENST00000507617 282 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC6.63□□□□□ -1.35
COL6A1P12109 FABP5P6-201ENST00000510588 409 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC6.63□□□□□ -1.35
COL6A1P12109 HMGB1P46-201ENST00000520062 610 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC6.63□□□□□ -1.35
COL6A1P12109 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC6.63□□□□□ -1.35
COL6A1P12109 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC6.63□□□□□ -1.35
COL6A1P12109 OR6M2P-201ENST00000529831 871 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL6A1P12109 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC6.63□□□□□ -1.35
COL6A1P12109 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC6.63□□□□□ -1.35
COL6A1P12109 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC6.63□□□□□ -1.35
COL6A1P12109 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC6.63□□□□□ -1.35
COL6A1P12109 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC6.63□□□□□ -1.35
COL6A1P12109 AC124283.4-201ENST00000581815 456 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC6.63□□□□□ -1.35
COL6A1P12109 AL109653.1-201ENST00000603091 248 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC6.63□□□□□ -1.35
COL6A1P12109 AL512329.2-201ENST00000607350 548 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC6.63□□□□□ -1.35
COL6A1P12109 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL6A1P12109 VN1R9P-201ENST00000614184 867 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 AC024255.1-201ENST00000614376 102 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 AC008115.3-201ENST00000614874 549 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.63□□□□□ -1.35
COL6A1P12109 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC6.63□□□□□ -1.35
COL6A1P12109 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC6.63□□□□□ -1.35
COL6A1P12109 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
COL6A1P12109 CASC19-248ENST00000641674 1356 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
COL6A1P12109 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL6A1P12109 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL6A1P12109 TTC41P-205ENST00000551270 3963 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC6.63□□□□□ -1.35
COL6A1P12109 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.63□□□□□ -1.35
COL6A1P12109 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6.63□□□□□ -1.35
COL6A1P12109 AL591848.4-201ENST00000567832 3472 ntBASIC6.63□□□□□ -1.35
COL6A1P12109 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC6.62□□□□□ -1.35
COL6A1P12109 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
COL6A1P12109 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL6A1P12109 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL6A1P12109 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL6A1P12109 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL6A1P12109 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
COL6A1P12109 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC6.62□□□□□ -1.35
COL6A1P12109 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL6A1P12109 AC079753.1-201ENST00000623243 3868 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC6.62□□□□□ -1.35
COL6A1P12109 TPT1-204ENST00000379060 764 ntTSL 5 BASIC6.62□□□□□ -1.35
COL6A1P12109 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
COL6A1P12109 ST13P16-201ENST00000401760 781 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 MIR1302-8-201ENST00000408342 128 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 RN7SKP97-201ENST00000410966 333 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 TRGV6-201ENST00000417928 299 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 RBMY2KP-201ENST00000418221 992 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 NDUFA5P10-201ENST00000432147 357 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC6.62□□□□□ -1.35
COL6A1P12109 MED6P1-201ENST00000439659 713 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC6.62□□□□□ -1.35
COL6A1P12109 OR10R1P-201ENST00000441524 1141 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 AC073648.4-201ENST00000442655 781 ntBASIC6.62□□□□□ -1.35
COL6A1P12109 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC6.62□□□□□ -1.35
COL6A1P12109 OR13K1P-201ENST00000444577 975 ntBASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms