Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A4P53420 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.42□□□□□ -1.54
COL4A4P53420 Z98755.1-201ENST00000407015 1384 ntBASIC5.42□□□□□ -1.54
COL4A4P53420 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A4P53420 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A4P53420 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A4P53420 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A4P53420 RN7SKP106-201ENST00000410832 272 ntBASIC5.42□□□□□ -1.54
COL4A4P53420 AC090018.1-201ENST00000434369 367 ntBASIC5.42□□□□□ -1.54
COL4A4P53420 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.42□□□□□ -1.54
COL4A4P53420 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.42□□□□□ -1.54
COL4A4P53420 RPL10P17-201ENST00000453852 316 ntBASIC5.42□□□□□ -1.54
COL4A4P53420 RN7SL41P-201ENST00000476144 297 ntBASIC5.42□□□□□ -1.54
COL4A4P53420 AC098976.1-201ENST00000513014 541 ntBASIC5.42□□□□□ -1.54
COL4A4P53420 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.42□□□□□ -1.54
COL4A4P53420 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.42□□□□□ -1.54
COL4A4P53420 OR5M2P-201ENST00000529003 936 ntBASIC5.42□□□□□ -1.54
COL4A4P53420 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC5.42□□□□□ -1.54
COL4A4P53420 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC5.42□□□□□ -1.54
COL4A4P53420 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.42□□□□□ -1.54
COL4A4P53420 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.42□□□□□ -1.54
COL4A4P53420 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
COL4A4P53420 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A4P53420 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A4P53420 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.42□□□□□ -1.54
COL4A4P53420 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A4P53420 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
COL4A4P53420 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A4P53420 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A4P53420 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
COL4A4P53420 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A4P53420 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A4P53420 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A4P53420 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC5.41□□□□□ -1.54
COL4A4P53420 RPL17P50-201ENST00000396131 546 ntBASIC5.41□□□□□ -1.54
COL4A4P53420 SNORA77-201ENST00000408716 125 ntBASIC5.41□□□□□ -1.54
COL4A4P53420 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.41□□□□□ -1.54
COL4A4P53420 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.41□□□□□ -1.54
COL4A4P53420 AL161722.2-201ENST00000434731 981 ntBASIC5.41□□□□□ -1.54
COL4A4P53420 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5.41□□□□□ -1.54
COL4A4P53420 BX842559.2-201ENST00000451418 605 ntBASIC5.41□□□□□ -1.54
COL4A4P53420 AC097486.1-201ENST00000515331 210 ntBASIC5.41□□□□□ -1.54
COL4A4P53420 AC012400.1-201ENST00000518452 381 ntBASIC5.41□□□□□ -1.54
COL4A4P53420 AC100784.1-201ENST00000522790 310 ntBASIC5.41□□□□□ -1.54
COL4A4P53420 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.41□□□□□ -1.54
COL4A4P53420 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
COL4A4P53420 NMNAT1P1-201ENST00000554095 876 ntBASIC5.41□□□□□ -1.54
COL4A4P53420 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC5.41□□□□□ -1.54
COL4A4P53420 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.41□□□□□ -1.54
COL4A4P53420 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A4P53420 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.41□□□□□ -1.54
COL4A4P53420 AC093297.3-201ENST00000607056 2517 ntBASIC5.41□□□□□ -1.54
COL4A4P53420 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.41□□□□□ -1.54
COL4A4P53420 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A4P53420 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
COL4A4P53420 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.41□□□□□ -1.54
COL4A4P53420 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A4P53420 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC5.41□□□□□ -1.54
COL4A4P53420 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
COL4A4P53420 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A4P53420 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A4P53420 AL669831.5-218ENST00000591702 1873 ntBASIC5.41□□□□□ -1.54
COL4A4P53420 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A4P53420 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A4P53420 AC097478.1-206ENST00000513572 2010 ntTSL 3 BASIC5.41□□□□□ -1.54
COL4A4P53420 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A4P53420 ZNF652P1-201ENST00000442420 1309 ntBASIC5.41□□□□□ -1.54
COL4A4P53420 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.41□□□□□ -1.54
COL4A4P53420 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A4P53420 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC5.4□□□□□ -1.54
COL4A4P53420 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.4□□□□□ -1.54
COL4A4P53420 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
COL4A4P53420 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A4P53420 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.4□□□□□ -1.54
COL4A4P53420 CBX1P1-201ENST00000440184 427 ntBASIC5.4□□□□□ -1.54
COL4A4P53420 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.4□□□□□ -1.54
COL4A4P53420 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.4□□□□□ -1.54
COL4A4P53420 AC022360.1-201ENST00000521058 340 ntBASIC5.4□□□□□ -1.54
COL4A4P53420 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
COL4A4P53420 PRPF19P1-201ENST00000584766 898 ntBASIC5.4□□□□□ -1.54
COL4A4P53420 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC5.4□□□□□ -1.54
COL4A4P53420 RPL26P30-202ENST00000602923 645 ntBASIC5.4□□□□□ -1.54
COL4A4P53420 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC5.4□□□□□ -1.54
COL4A4P53420 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
COL4A4P53420 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A4P53420 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A4P53420 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A4P53420 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A4P53420 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A4P53420 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A4P53420 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
COL4A4P53420 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A4P53420 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.54
COL4A4P53420 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A4P53420 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A4P53420 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
COL4A4P53420 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A4P53420 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.4□□□□□ -1.55
COL4A4P53420 EYA4-206ENST00000431403 2154 ntTSL 5 BASIC5.4□□□□□ -1.55
COL4A4P53420 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms