Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC073143.1-201ENST00000436316 395 ntBASIC8.34□□□□□ -1.08
CUX1P39880 MTCYBP21-201ENST00000443300 1113 ntBASIC8.34□□□□□ -1.08
CUX1P39880 MED28P3-201ENST00000444288 531 ntBASIC8.34□□□□□ -1.08
CUX1P39880 RPL10P17-201ENST00000453852 316 ntBASIC8.34□□□□□ -1.08
CUX1P39880 RN7SL817P-201ENST00000480777 288 ntBASIC8.34□□□□□ -1.08
CUX1P39880 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC8.34□□□□□ -1.08
CUX1P39880 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC8.34□□□□□ -1.08
CUX1P39880 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC8.34□□□□□ -1.08
CUX1P39880 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC8.34□□□□□ -1.08
CUX1P39880 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.08
CUX1P39880 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC8.34□□□□□ -1.08
CUX1P39880 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC8.34□□□□□ -1.08
CUX1P39880 IPO5-229ENST00000631030 192 ntTSL 5 BASIC8.34□□□□□ -1.08
CUX1P39880 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC8.34□□□□□ -1.08
CUX1P39880 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
CUX1P39880 AL359955.1-201ENST00000455242 3275 ntBASIC8.33□□□□□ -1.08
CUX1P39880 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC8.33□□□□□ -1.08
CUX1P39880 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
CUX1P39880 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
CUX1P39880 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
CUX1P39880 RPL12P34-201ENST00000424532 479 ntBASIC8.33□□□□□ -1.08
CUX1P39880 MRPS21P2-201ENST00000424704 264 ntBASIC8.33□□□□□ -1.08
CUX1P39880 AC009238.2-201ENST00000431026 355 ntBASIC8.33□□□□□ -1.08
CUX1P39880 TRIM60P9Y-201ENST00000438459 816 ntBASIC8.33□□□□□ -1.08
CUX1P39880 TRIM60P11Y-201ENST00000445313 801 ntBASIC8.33□□□□□ -1.08
CUX1P39880 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
CUX1P39880 AC006338.2-201ENST00000616864 791 ntBASIC8.33□□□□□ -1.08
CUX1P39880 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
CUX1P39880 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC8.33□□□□□ -1.08
CUX1P39880 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
CUX1P39880 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC8.32□□□□□ -1.08
CUX1P39880 ERVFRD-3-201ENST00000578561 1617 ntBASIC8.32□□□□□ -1.08
CUX1P39880 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
CUX1P39880 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC8.32□□□□□ -1.08
CUX1P39880 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
CUX1P39880 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC8.32□□□□□ -1.08
CUX1P39880 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
CUX1P39880 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
CUX1P39880 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC8.32□□□□□ -1.08
CUX1P39880 RNA5SP223-201ENST00000365174 120 ntBASIC8.32□□□□□ -1.08
CUX1P39880 RNA5SP397-201ENST00000391323 118 ntBASIC8.32□□□□□ -1.08
CUX1P39880 LRRC37BP1-201ENST00000398851 714 ntBASIC8.32□□□□□ -1.08
CUX1P39880 AL390316.1-201ENST00000406279 553 ntBASIC8.32□□□□□ -1.08
CUX1P39880 RPL19P16-201ENST00000433839 588 ntBASIC8.32□□□□□ -1.08
CUX1P39880 BX842559.2-201ENST00000451418 605 ntBASIC8.32□□□□□ -1.08
CUX1P39880 AC022133.1-201ENST00000490961 571 ntBASIC8.32□□□□□ -1.08
CUX1P39880 RN7SKP67-201ENST00000515905 235 ntBASIC8.32□□□□□ -1.08
CUX1P39880 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
CUX1P39880 KPNA2P3-201ENST00000584190 848 ntBASIC8.32□□□□□ -1.08
CUX1P39880 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC8.32□□□□□ -1.08
CUX1P39880 AC108359.1-201ENST00000616451 1211 ntBASIC8.32□□□□□ -1.08
CUX1P39880 RNF123-214ENST00000629802 207 ntTSL 5 BASIC8.32□□□□□ -1.08
CUX1P39880 AC091046.3-201ENST00000631455 1574 ntBASIC8.32□□□□□ -1.08
CUX1P39880 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
CUX1P39880 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC8.32□□□□□ -1.08
CUX1P39880 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC8.31□□□□□ -1.08
CUX1P39880 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
CUX1P39880 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
CUX1P39880 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC8.31□□□□□ -1.08
CUX1P39880 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
CUX1P39880 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
CUX1P39880 RPL7AP49-201ENST00000429522 581 ntBASIC8.31□□□□□ -1.08
CUX1P39880 AL591438.1-201ENST00000433508 581 ntBASIC8.31□□□□□ -1.08
CUX1P39880 TXNP2-201ENST00000443918 295 ntBASIC8.31□□□□□ -1.08
CUX1P39880 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC8.31□□□□□ -1.08
CUX1P39880 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC8.31□□□□□ -1.08
CUX1P39880 RN7SL802P-201ENST00000577858 299 ntBASIC8.31□□□□□ -1.08
CUX1P39880 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC8.31□□□□□ -1.08
CUX1P39880 AC069366.1-201ENST00000583159 838 ntBASIC8.31□□□□□ -1.08
CUX1P39880 MIR7853-201ENST00000584820 132 ntBASIC8.31□□□□□ -1.08
CUX1P39880 AC073091.2-201ENST00000603205 907 ntBASIC8.31□□□□□ -1.08
CUX1P39880 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC8.31□□□□□ -1.08
CUX1P39880 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC8.31□□□□□ -1.08
CUX1P39880 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC8.31□□□□□ -1.08
CUX1P39880 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC8.31□□□□□ -1.08
CUX1P39880 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
CUX1P39880 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
CUX1P39880 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC8.31□□□□□ -1.08
CUX1P39880 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
CUX1P39880 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
CUX1P39880 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC8.31□□□□□ -1.08
CUX1P39880 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
CUX1P39880 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
CUX1P39880 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CUX1P39880 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CUX1P39880 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CUX1P39880 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC8.3□□□□□ -1.08
CUX1P39880 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC8.3□□□□□ -1.08
CUX1P39880 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
CUX1P39880 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC8.3□□□□□ -1.08
CUX1P39880 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CUX1P39880 SCAND3P1-201ENST00000439854 1060 ntBASIC8.3□□□□□ -1.08
CUX1P39880 NDUFAF4P2-201ENST00000445374 520 ntBASIC8.3□□□□□ -1.08
CUX1P39880 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC8.3□□□□□ -1.08
CUX1P39880 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC8.3□□□□□ -1.08
CUX1P39880 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
CUX1P39880 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC8.3□□□□□ -1.08
CUX1P39880 OR8Q1P-201ENST00000526467 655 ntBASIC8.3□□□□□ -1.08
CUX1P39880 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC8.3□□□□□ -1.08
CUX1P39880 TVP23CP2-201ENST00000571473 623 ntBASIC8.3□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms