Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CENPIP1-201ENST00000425713 902 ntBASIC6.23□□□□□ -1.41
COL5A3P25940 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC6.23□□□□□ -1.41
COL5A3P25940 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC6.23□□□□□ -1.41
COL5A3P25940 RPL10P17-201ENST00000453852 316 ntBASIC6.23□□□□□ -1.41
COL5A3P25940 AC109327.1-201ENST00000471666 403 ntBASIC6.23□□□□□ -1.41
COL5A3P25940 TOMM20P2-201ENST00000540082 421 ntBASIC6.23□□□□□ -1.41
COL5A3P25940 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC6.23□□□□□ -1.41
COL5A3P25940 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC6.23□□□□□ -1.41
COL5A3P25940 AP005119.2-201ENST00000579735 1105 ntBASIC6.23□□□□□ -1.41
COL5A3P25940 AL355834.1-201ENST00000556602 3965 ntBASIC6.23□□□□□ -1.41
COL5A3P25940 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
COL5A3P25940 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL5A3P25940 ERVFRD-3-201ENST00000578561 1617 ntBASIC6.23□□□□□ -1.41
COL5A3P25940 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL5A3P25940 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC6.23□□□□□ -1.41
COL5A3P25940 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
COL5A3P25940 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC6.23□□□□□ -1.41
COL5A3P25940 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC6.23□□□□□ -1.41
COL5A3P25940 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL5A3P25940 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL5A3P25940 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL5A3P25940 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC6.22□□□□□ -1.41
COL5A3P25940 LRRC37BP1-201ENST00000398851 714 ntBASIC6.22□□□□□ -1.41
COL5A3P25940 RN7SKP16-201ENST00000410180 299 ntBASIC6.22□□□□□ -1.41
COL5A3P25940 AC009238.2-201ENST00000431026 355 ntBASIC6.22□□□□□ -1.41
COL5A3P25940 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC6.22□□□□□ -1.41
COL5A3P25940 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC6.22□□□□□ -1.41
COL5A3P25940 PPIAP21-201ENST00000464473 501 ntBASIC6.22□□□□□ -1.41
COL5A3P25940 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
COL5A3P25940 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC6.22□□□□□ -1.41
COL5A3P25940 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC6.22□□□□□ -1.41
COL5A3P25940 AC116553.2-201ENST00000564203 463 ntBASIC6.22□□□□□ -1.41
COL5A3P25940 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC6.22□□□□□ -1.41
COL5A3P25940 AC069366.1-201ENST00000583159 838 ntBASIC6.22□□□□□ -1.41
COL5A3P25940 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC6.22□□□□□ -1.41
COL5A3P25940 AC115286.1-201ENST00000604298 434 ntBASIC6.22□□□□□ -1.41
COL5A3P25940 AC108359.1-201ENST00000616451 1211 ntBASIC6.22□□□□□ -1.41
COL5A3P25940 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC6.22□□□□□ -1.41
COL5A3P25940 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL5A3P25940 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL5A3P25940 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
COL5A3P25940 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL5A3P25940 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL5A3P25940 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL5A3P25940 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
COL5A3P25940 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL5A3P25940 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL5A3P25940 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL5A3P25940 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC6.22□□□□□ -1.41
COL5A3P25940 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL5A3P25940 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
COL5A3P25940 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
COL5A3P25940 AC097523.2-201ENST00000435551 652 ntBASIC6.22□□□□□ -1.41
COL5A3P25940 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC6.22□□□□□ -1.41
COL5A3P25940 AC079168.2-201ENST00000453977 416 ntBASIC6.22□□□□□ -1.41
COL5A3P25940 AC011276.1-201ENST00000469688 323 ntBASIC6.22□□□□□ -1.41
COL5A3P25940 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC6.22□□□□□ -1.41
COL5A3P25940 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC6.22□□□□□ -1.41
COL5A3P25940 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC6.22□□□□□ -1.41
COL5A3P25940 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC6.22□□□□□ -1.41
COL5A3P25940 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC6.22□□□□□ -1.41
COL5A3P25940 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC6.22□□□□□ -1.41
COL5A3P25940 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL5A3P25940 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
COL5A3P25940 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
COL5A3P25940 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.41
COL5A3P25940 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
COL5A3P25940 AC107980.1-201ENST00000558671 3355 ntBASIC6.21□□□□□ -1.41
COL5A3P25940 AL359955.1-201ENST00000455242 3275 ntBASIC6.21□□□□□ -1.41
COL5A3P25940 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.21□□□□□ -1.41
COL5A3P25940 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A3P25940 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A3P25940 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A3P25940 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A3P25940 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
COL5A3P25940 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A3P25940 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC6.21□□□□□ -1.42
COL5A3P25940 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC6.21□□□□□ -1.42
COL5A3P25940 AC023141.6-201ENST00000429418 337 ntBASIC6.21□□□□□ -1.42
COL5A3P25940 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC6.21□□□□□ -1.42
COL5A3P25940 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC6.21□□□□□ -1.42
COL5A3P25940 RN7SL41P-201ENST00000476144 297 ntBASIC6.21□□□□□ -1.42
COL5A3P25940 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC6.21□□□□□ -1.42
COL5A3P25940 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC6.21□□□□□ -1.42
COL5A3P25940 AC005962.2-201ENST00000611427 652 ntBASIC6.21□□□□□ -1.42
COL5A3P25940 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A3P25940 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A3P25940 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A3P25940 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A3P25940 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
COL5A3P25940 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A3P25940 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A3P25940 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.21□□□□□ -1.42
COL5A3P25940 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
COL5A3P25940 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL5A3P25940 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC6.21□□□□□ -1.42
COL5A3P25940 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC6.2□□□□□ -1.42
COL5A3P25940 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC6.2□□□□□ -1.42
COL5A3P25940 MTCO1P15-201ENST00000529569 1526 ntBASIC6.2□□□□□ -1.42
COL5A3P25940 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms