Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 C9orf131-205ENST00000421362 3259 ntAPPRIS ALT2 TSL 4 BASIC8.18□□□□□ -1.1
LRCH3Q96II8 OR5BR1P-201ENST00000524992 1330 ntBASIC8.18□□□□□ -1.1
LRCH3Q96II8 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC8.18□□□□□ -1.1
LRCH3Q96II8 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC8.18□□□□□ -1.1
LRCH3Q96II8 SMG7-202ENST00000367537 5970 ntAPPRIS ALT2 TSL 5 BASIC8.18□□□□□ -1.1
LRCH3Q96II8 CU633906.2-201ENST00000624576 2257 ntTSL 5 BASIC8.18□□□□□ -1.1
LRCH3Q96II8 AP000473.2-201ENST00000602659 1537 ntBASIC8.18□□□□□ -1.1
LRCH3Q96II8 MAPK8-201ENST00000360332 5438 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
LRCH3Q96II8 NEMP1-201ENST00000300128 5590 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
LRCH3Q96II8 TMC5-208ENST00000564959 2434 ntTSL 2 BASIC8.18□□□□□ -1.1
LRCH3Q96II8 WBP1L-201ENST00000369889 4107 ntAPPRIS P3 TSL 1 (best) BASIC8.18□□□□□ -1.1
LRCH3Q96II8 ASNSP1-204ENST00000641977 1664 ntBASIC8.18□□□□□ -1.1
LRCH3Q96II8 AL589642.1-201ENST00000430787 2582 ntTSL 2 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC8.17□□□□□ -1.1
LRCH3Q96II8 ESRP1-202ENST00000423620 3746 ntAPPRIS ALT1 TSL 1 (best) BASIC8.17□□□□□ -1.1
LRCH3Q96II8 HDAC9-212ENST00000432645 3099 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
LRCH3Q96II8 GPM6B-201ENST00000316715 3275 ntAPPRIS ALT1 TSL 2 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 WBP2NL-201ENST00000328823 2255 ntAPPRIS P2 TSL 1 (best) BASIC8.17□□□□□ -1.1
LRCH3Q96II8 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
LRCH3Q96II8 GANC-206ENST00000566442 2512 ntTSL 2 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 MGP-201ENST00000228938 694 ntTSL 3 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 AL139327.1-201ENST00000382988 348 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 MIR217-201ENST00000384817 110 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 AC068050.1-201ENST00000394891 380 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 RNU6-985P-201ENST00000410182 104 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 RPL18AP14-201ENST00000417685 526 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 NPM1P34-201ENST00000428821 893 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 HIGD1AP16-201ENST00000450986 258 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 DNAJB5P1-201ENST00000454004 806 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 COX6B1P2-201ENST00000489624 230 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 AC011352.2-201ENST00000514574 1016 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 RNA5SP401-201ENST00000515920 127 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 SCARNA21.2-201ENST00000516600 166 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 AP000889.2-201ENST00000532684 490 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 AC027544.3-201ENST00000535082 757 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 MIR3154-201ENST00000577829 84 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 HMGN1P30-201ENST00000589286 268 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 NDUFB9P1-201ENST00000604683 510 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 AL390877.1-201ENST00000605704 214 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 AC022893.3-201ENST00000607665 437 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 RN7SL261P-201ENST00000613441 282 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 AC109780.1-201ENST00000451768 1344 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 MAPK10-285ENST00000641207 2746 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 ADAM7-203ENST00000441335 1417 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
LRCH3Q96II8 RBPJP7-201ENST00000442803 1447 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 RBPJP5-201ENST00000449433 1447 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 ERC1-202ENST00000355446 5796 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
LRCH3Q96II8 CLIC5-201ENST00000185206 6023 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
LRCH3Q96II8 CLIP1-218ENST00000545889 4633 ntTSL 5 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
LRCH3Q96II8 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 ATP5A1P10-201ENST00000622403 1603 ntBASIC8.17□□□□□ -1.1
LRCH3Q96II8 GTF2IP12-202ENST00000634317 5052 ntTSL 5 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
LRCH3Q96II8 VPS36-201ENST00000378060 4417 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
LRCH3Q96II8 MTIF2-203ENST00000394600 2221 ntAPPRIS P1 TSL 2 BASIC8.17□□□□□ -1.1
LRCH3Q96II8 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
LRCH3Q96II8 LY75-CD302-201ENST00000504764 5650 ntAPPRIS P4 TSL 2 BASIC8.16□□□□□ -1.1
LRCH3Q96II8 STON2-209ENST00000614646 2964 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
LRCH3Q96II8 FAM120B-203ENST00000537664 3212 ntAPPRIS ALT2 TSL 2 BASIC8.16□□□□□ -1.1
LRCH3Q96II8 KIAA1217-201ENST00000307544 3281 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LRCH3Q96II8 CFAP47-201ENST00000297866 3608 ntTSL 2 BASIC8.16□□□□□ -1.1
LRCH3Q96II8 GRB10-207ENST00000402578 4760 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LRCH3Q96II8 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LRCH3Q96II8 AC010132.2-201ENST00000295493 1043 ntBASIC8.16□□□□□ -1.1
LRCH3Q96II8 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
LRCH3Q96II8 SLC37A3-202ENST00000340308 2955 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LRCH3Q96II8 TCF7L2-209ENST00000369395 1541 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LRCH3Q96II8 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LRCH3Q96II8 RNY4P36-201ENST00000391116 96 ntBASIC8.16□□□□□ -1.1
LRCH3Q96II8 G3BP2-203ENST00000395719 4217 ntAPPRIS P4 TSL 1 (best) BASIC8.16□□□□□ -1.1
LRCH3Q96II8 RPA3-203ENST00000401447 414 ntTSL 3 BASIC8.16□□□□□ -1.1
LRCH3Q96II8 OFD1P1Y-201ENST00000411756 1225 ntBASIC8.16□□□□□ -1.1
LRCH3Q96II8 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC8.16□□□□□ -1.1
LRCH3Q96II8 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC8.16□□□□□ -1.1
LRCH3Q96II8 AC018880.1-201ENST00000418898 1319 ntBASIC8.16□□□□□ -1.1
LRCH3Q96II8 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC8.16□□□□□ -1.1
LRCH3Q96II8 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LRCH3Q96II8 ZMIZ1-AS1-201ENST00000428862 2851 ntTSL 5 BASIC8.16□□□□□ -1.1
LRCH3Q96II8 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC8.16□□□□□ -1.1
LRCH3Q96II8 PUDPP2-201ENST00000431423 643 ntBASIC8.16□□□□□ -1.1
LRCH3Q96II8 XRCC6P5-201ENST00000435236 1795 ntBASIC8.16□□□□□ -1.1
LRCH3Q96II8 AL731892.1-201ENST00000437364 1192 ntBASIC8.16□□□□□ -1.1
LRCH3Q96II8 LINC00837-201ENST00000443246 3991 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LRCH3Q96II8 RPL32P28-201ENST00000443577 397 ntBASIC8.16□□□□□ -1.1
LRCH3Q96II8 LRRC37A12P-201ENST00000454917 1801 ntBASIC8.16□□□□□ -1.1
LRCH3Q96II8 AC099563.1-201ENST00000456086 418 ntBASIC8.16□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms