Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC7.79□□□□□ -1.16
HLA-CQ95604 AC078909.2-201ENST00000620584 398 ntBASIC7.79□□□□□ -1.16
HLA-CQ95604 CASC19-212ENST00000641153 1287 ntBASIC7.79□□□□□ -1.16
HLA-CQ95604 SORBS1-212ENST00000371249 5927 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
HLA-CQ95604 AC016027.2-201ENST00000441167 2493 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
HLA-CQ95604 ACSL1-212ENST00000622937 4103 ntTSL 2 BASIC7.79□□□□□ -1.16
HLA-CQ95604 PDIK1L-201ENST00000374269 2566 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
HLA-CQ95604 SEC23IP-208ENST00000543134 1461 ntTSL 5 BASIC7.79□□□□□ -1.16
HLA-CQ95604 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
HLA-CQ95604 AC008498.2-201ENST00000624033 2322 ntBASIC7.79□□□□□ -1.16
HLA-CQ95604 SLC39A12-203ENST00000377374 2639 ntAPPRIS P3 TSL 2 BASIC7.79□□□□□ -1.16
HLA-CQ95604 CARD8-216ENST00000520153 2617 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
HLA-CQ95604 FIGNL1-213ENST00000615084 3368 ntAPPRIS P1 TSL 3 BASIC7.79□□□□□ -1.16
HLA-CQ95604 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC7.79□□□□□ -1.16
HLA-CQ95604 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC7.79□□□□□ -1.16
HLA-CQ95604 THG1L-201ENST00000231198 3107 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC7.78□□□□□ -1.16
HLA-CQ95604 ECI2-204ENST00000380125 1405 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 MICAL3-219ENST00000585038 3323 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 SUPT16H-201ENST00000216297 4684 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC7.78□□□□□ -1.16
HLA-CQ95604 PPARA-203ENST00000407236 9995 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC7.78□□□□□ -1.16
HLA-CQ95604 DIAPH3-203ENST00000400319 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 DPY19L3-205ENST00000586987 5925 ntTSL 5 BASIC7.78□□□□□ -1.16
HLA-CQ95604 PTPN3-201ENST00000262539 6832 ntTSL 5 BASIC7.78□□□□□ -1.16
HLA-CQ95604 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
HLA-CQ95604 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
HLA-CQ95604 SNORA70.5-201ENST00000365519 135 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 PFKFB1-201ENST00000374992 1156 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 RNU6-196P-201ENST00000384315 107 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
HLA-CQ95604 RNA5SP53-201ENST00000391299 120 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 AC009413.1-201ENST00000414823 399 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC7.78□□□□□ -1.16
HLA-CQ95604 RPSAP60-201ENST00000415403 880 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC7.78□□□□□ -1.16
HLA-CQ95604 AL139184.1-202ENST00000422303 222 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 MTCYBP8-201ENST00000422855 651 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 MTCO3P21-201ENST00000430791 643 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC7.78□□□□□ -1.16
HLA-CQ95604 AC016691.1-201ENST00000441321 413 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 AC079781.1-201ENST00000441505 394 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 AL136380.1-201ENST00000447970 162 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 AC073594.1-201ENST00000462065 364 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC7.78□□□□□ -1.16
HLA-CQ95604 AC017015.1-201ENST00000477387 286 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 RN7SL332P-201ENST00000482163 254 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 HNRNPA1P44-201ENST00000503999 879 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 SRP72-202ENST00000504757 745 ntTSL 2 BASIC7.78□□□□□ -1.16
HLA-CQ95604 STX18-IT1-201ENST00000515487 542 ntTSL 4 BASIC7.78□□□□□ -1.16
HLA-CQ95604 Y_RNA.711-201ENST00000516993 102 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 IGLVVI-25-1-201ENST00000521893 249 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC7.78□□□□□ -1.16
HLA-CQ95604 IGHVIII-67-4-201ENST00000524281 296 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC7.78□□□□□ -1.16
HLA-CQ95604 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC7.78□□□□□ -1.16
HLA-CQ95604 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC7.78□□□□□ -1.16
HLA-CQ95604 NELL2-211ENST00000548826 559 ntTSL 2 BASIC7.78□□□□□ -1.16
HLA-CQ95604 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC7.78□□□□□ -1.16
HLA-CQ95604 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 AC034105.3-201ENST00000565294 442 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC7.78□□□□□ -1.16
HLA-CQ95604 AL158151.4-201ENST00000600965 507 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 AL390877.1-201ENST00000605704 214 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 U47924.1-201ENST00000606539 434 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 AC015908.5-201ENST00000623289 343 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 AC100810.6-201ENST00000638068 285 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 TTC21A-205ENST00000440121 3941 ntAPPRIS P3 TSL 2 BASIC7.78□□□□□ -1.16
HLA-CQ95604 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 AJ009632.1-201ENST00000433588 1376 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 KCNK2-201ENST00000391894 1491 ntAPPRIS P3 TSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC7.78□□□□□ -1.16
HLA-CQ95604 EPHA7-201ENST00000369297 1885 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC7.78□□□□□ -1.16
HLA-CQ95604 AC139426.3-201ENST00000605648 2059 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 AC011447.6-201ENST00000623510 2598 ntBASIC7.78□□□□□ -1.16
HLA-CQ95604 RRM2-201ENST00000304567 3271 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC7.78□□□□□ -1.16
HLA-CQ95604 MTERF4-222ENST00000614476 4524 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
HLA-CQ95604 CSTF2T-201ENST00000331173 4105 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
HLA-CQ95604 XRCC5-202ENST00000392133 3761 ntAPPRIS P1 TSL 5 BASIC7.77□□□□□ -1.16
HLA-CQ95604 PIWIL2-204ENST00000521356 3488 ntTSL 2 BASIC7.77□□□□□ -1.16
HLA-CQ95604 TGM4-201ENST00000296125 3388 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.16
HLA-CQ95604 ZNF611-219ENST00000602162 3299 ntTSL 2 BASIC7.77□□□□□ -1.16
HLA-CQ95604 TRIM16-202ENST00000416464 3184 ntTSL 2 BASIC7.77□□□□□ -1.16
HLA-CQ95604 ZNF605-202ENST00000360187 9340 ntAPPRIS P3 TSL 1 (best) BASIC7.77□□□□□ -1.16
HLA-CQ95604 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC7.77□□□□□ -1.17
HLA-CQ95604 MYO10-201ENST00000274203 11456 ntAPPRIS ALT2 TSL 5 BASIC7.77□□□□□ -1.17
HLA-CQ95604 PIGN-225ENST00000638435 4382 ntTSL 5 BASIC7.77□□□□□ -1.17
HLA-CQ95604 ADA2-204ENST00000399839 3986 ntAPPRIS P3 TSL 5 BASIC7.77□□□□□ -1.17
HLA-CQ95604 RXFP2-202ENST00000380314 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.17
HLA-CQ95604 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC7.77□□□□□ -1.17
HLA-CQ95604 LINC01060-204ENST00000510832 2435 ntTSL 2 BASIC7.77□□□□□ -1.17
HLA-CQ95604 AL354854.1-201ENST00000455940 1363 ntBASIC7.77□□□□□ -1.17
HLA-CQ95604 ELP3-210ENST00000521015 3158 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
HLA-CQ95604 HDAC9-212ENST00000432645 3099 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms