Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 HMGB1P19-201ENST00000517578 577 ntBASIC3.83□□□□□ -1.8
FOXA3P55318 TPT1-AS1-209ENST00000520585 818 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXA3P55318 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC3.83□□□□□ -1.8
FOXA3P55318 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC3.83□□□□□ -1.8
FOXA3P55318 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC3.83□□□□□ -1.8
FOXA3P55318 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC3.83□□□□□ -1.8
FOXA3P55318 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC3.83□□□□□ -1.8
FOXA3P55318 AC079905.1-201ENST00000549280 475 ntBASIC3.83□□□□□ -1.8
FOXA3P55318 AL512310.9-201ENST00000553311 948 ntBASIC3.83□□□□□ -1.8
FOXA3P55318 NDUFB4P11-201ENST00000560510 395 ntBASIC3.83□□□□□ -1.8
FOXA3P55318 MRPS21P7-201ENST00000566937 238 ntBASIC3.83□□□□□ -1.8
FOXA3P55318 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC3.83□□□□□ -1.8
FOXA3P55318 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
FOXA3P55318 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
FOXA3P55318 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXA3P55318 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC3.83□□□□□ -1.8
FOXA3P55318 AL137072.1-201ENST00000603444 466 ntBASIC3.83□□□□□ -1.8
FOXA3P55318 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
FOXA3P55318 AL008729.2-201ENST00000606393 473 ntBASIC3.83□□□□□ -1.8
FOXA3P55318 AC005828.7-201ENST00000607331 556 ntBASIC3.83□□□□□ -1.8
FOXA3P55318 OR7M1P-201ENST00000608946 533 ntBASIC3.83□□□□□ -1.8
FOXA3P55318 TEX41-279ENST00000629149 609 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXA3P55318 AC087565.3-203ENST00000641018 837 ntBASIC3.83□□□□□ -1.8
FOXA3P55318 OR8G3P-202ENST00000641572 1255 ntBASIC3.83□□□□□ -1.8
FOXA3P55318 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXA3P55318 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
FOXA3P55318 AC104118.1-201ENST00000607625 1589 ntBASIC3.83□□□□□ -1.8
FOXA3P55318 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
FOXA3P55318 AC087190.4-201ENST00000574616 8334 ntBASIC3.83□□□□□ -1.8
FOXA3P55318 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
FOXA3P55318 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
FOXA3P55318 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
FOXA3P55318 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
FOXA3P55318 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
FOXA3P55318 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA3P55318 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA3P55318 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA3P55318 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
FOXA3P55318 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA3P55318 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA3P55318 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA3P55318 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC3.82□□□□□ -1.8
FOXA3P55318 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXA3P55318 COX6B1P3-201ENST00000312310 260 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 RNA5SP477-201ENST00000362639 119 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 RNU4-2-201ENST00000365668 141 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA3P55318 AL672167.2-201ENST00000377164 879 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 AL034417.1-201ENST00000399343 800 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 HSPA8P15-201ENST00000401676 786 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 AL512422.1-201ENST00000407033 553 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 AL132671.1-201ENST00000415736 308 ntTSL 3 BASIC3.82□□□□□ -1.8
FOXA3P55318 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC3.82□□□□□ -1.8
FOXA3P55318 SRSF1P1-201ENST00000424058 520 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 AC104843.2-201ENST00000427666 297 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC3.82□□□□□ -1.8
FOXA3P55318 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXA3P55318 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC3.82□□□□□ -1.8
FOXA3P55318 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC3.82□□□□□ -1.8
FOXA3P55318 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA3P55318 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC3.82□□□□□ -1.8
FOXA3P55318 LDHBP2-201ENST00000456969 1005 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC3.82□□□□□ -1.8
FOXA3P55318 AP002884.1-201ENST00000479691 655 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 LSM3P4-201ENST00000502948 309 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXA3P55318 AC097173.1-201ENST00000505862 819 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC3.82□□□□□ -1.8
FOXA3P55318 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC3.82□□□□□ -1.8
FOXA3P55318 CENPK-211ENST00000510693 1040 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXA3P55318 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXA3P55318 AC021733.2-201ENST00000518830 497 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 IGHVIII-2-1-201ENST00000518843 291 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXA3P55318 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC3.82□□□□□ -1.8
FOXA3P55318 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC3.82□□□□□ -1.8
FOXA3P55318 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC3.82□□□□□ -1.8
FOXA3P55318 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC3.82□□□□□ -1.8
FOXA3P55318 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA3P55318 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC3.82□□□□□ -1.8
FOXA3P55318 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC3.82□□□□□ -1.8
FOXA3P55318 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXA3P55318 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXA3P55318 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXA3P55318 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC3.82□□□□□ -1.8
FOXA3P55318 AC111152.1-202ENST00000635848 339 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 AL596275.2-207ENST00000641188 675 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 AL596275.2-204ENST00000641628 552 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 AL596275.2-206ENST00000641957 626 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC3.82□□□□□ -1.8
FOXA3P55318 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA3P55318 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA3P55318 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA3P55318 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
FOXA3P55318 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
FOXA3P55318 DDX18P4-201ENST00000511690 1966 ntBASIC3.82□□□□□ -1.8
FOXA3P55318 Z95327.2-201ENST00000414579 1873 ntBASIC3.81□□□□□ -1.8
FOXA3P55318 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
FOXA3P55318 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC3.81□□□□□ -1.8
FOXA3P55318 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms