Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL18A1P39060 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL18A1P39060 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL18A1P39060 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL18A1P39060 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC6.53□□□□□ -1.36
COL18A1P39060 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL18A1P39060 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC6.53□□□□□ -1.36
COL18A1P39060 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL18A1P39060 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC6.53□□□□□ -1.36
COL18A1P39060 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL18A1P39060 ATG4AP1-201ENST00000416893 538 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 RPL12P34-201ENST00000424532 479 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 AL732292.1-201ENST00000426692 226 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 BX276092.6-201ENST00000430476 250 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 TRIM60P9Y-201ENST00000438459 816 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC6.53□□□□□ -1.36
COL18A1P39060 AL136455.1-201ENST00000441083 1240 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 TRIM60P11Y-201ENST00000445313 801 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 BX276092.8-201ENST00000455722 250 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 PPIAP21-201ENST00000464473 501 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL18A1P39060 RN7SKP67-201ENST00000515905 235 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC6.53□□□□□ -1.36
COL18A1P39060 AC115286.1-201ENST00000604298 434 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC6.53□□□□□ -1.36
COL18A1P39060 AC007497.1-201ENST00000610421 561 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 AC006338.2-201ENST00000616864 791 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL18A1P39060 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL18A1P39060 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL18A1P39060 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC6.53□□□□□ -1.36
COL18A1P39060 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
COL18A1P39060 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC6.53□□□□□ -1.36
COL18A1P39060 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.53□□□□□ -1.36
COL18A1P39060 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.53□□□□□ -1.36
COL18A1P39060 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC6.53□□□□□ -1.36
COL18A1P39060 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC6.53□□□□□ -1.36
COL18A1P39060 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL18A1P39060 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL18A1P39060 MSL3P1-202ENST00000440028 1468 ntBASIC6.53□□□□□ -1.36
COL18A1P39060 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL18A1P39060 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL18A1P39060 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.36
COL18A1P39060 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.36
COL18A1P39060 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL18A1P39060 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
COL18A1P39060 RNU4-39P-201ENST00000362455 127 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 LRRC37BP1-201ENST00000398851 714 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL18A1P39060 RN7SKP16-201ENST00000410180 299 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 RPEP3-201ENST00000425462 676 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 AC046176.1-201ENST00000435260 1170 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 AC239367.2-201ENST00000447309 705 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 IGKV2D-10-201ENST00000520194 281 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 MAL2-201ENST00000522112 573 ntTSL 4 BASIC6.52□□□□□ -1.37
COL18A1P39060 DERA-209ENST00000532964 854 ntTSL 5 BASIC6.52□□□□□ -1.37
COL18A1P39060 AC027369.5-201ENST00000533838 755 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC6.52□□□□□ -1.37
COL18A1P39060 FCF1-203ENST00000553615 954 ntTSL 3 BASIC6.52□□□□□ -1.37
COL18A1P39060 TVP23CP2-201ENST00000571473 623 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC6.52□□□□□ -1.37
COL18A1P39060 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC6.52□□□□□ -1.37
COL18A1P39060 LDHA-225ENST00000625635 141 ntTSL 5 BASIC6.52□□□□□ -1.37
COL18A1P39060 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
COL18A1P39060 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC6.52□□□□□ -1.37
COL18A1P39060 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
COL18A1P39060 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
COL18A1P39060 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL18A1P39060 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL18A1P39060 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL18A1P39060 AL442639.1-201ENST00000625030 1899 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL18A1P39060 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC6.52□□□□□ -1.37
COL18A1P39060 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
COL18A1P39060 GLUD1P9-201ENST00000420997 1173 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.52□□□□□ -1.37
COL18A1P39060 AC023141.6-201ENST00000429418 337 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC6.52□□□□□ -1.37
COL18A1P39060 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC6.52□□□□□ -1.37
COL18A1P39060 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC6.52□□□□□ -1.37
COL18A1P39060 AC026402.1-201ENST00000513642 170 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC6.52□□□□□ -1.37
COL18A1P39060 MTCYBP13-201ENST00000578634 1093 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 IGKV1OR2-9-201ENST00000603957 287 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 IGKV1OR2-11-201ENST00000604120 287 ntBASIC6.52□□□□□ -1.37
COL18A1P39060 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC6.51□□□□□ -1.37
COL18A1P39060 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC6.51□□□□□ -1.37
COL18A1P39060 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL18A1P39060 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.51□□□□□ -1.37
COL18A1P39060 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL18A1P39060 AL359955.1-201ENST00000455242 3275 ntBASIC6.51□□□□□ -1.37
COL18A1P39060 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
COL18A1P39060 OR4K13-203ENST00000641904 5684 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
COL18A1P39060 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC6.51□□□□□ -1.37
COL18A1P39060 AC097523.2-201ENST00000435551 652 ntBASIC6.51□□□□□ -1.37
COL18A1P39060 CBX1P1-201ENST00000440184 427 ntBASIC6.51□□□□□ -1.37
COL18A1P39060 AC016772.1-201ENST00000444170 1261 ntBASIC6.51□□□□□ -1.37
COL18A1P39060 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC6.51□□□□□ -1.37
COL18A1P39060 AC023271.1-201ENST00000445936 1090 ntBASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms