Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL138924.1-201ENST00000629067 415 ntTSL 3 BASIC8.04□□□□□ -1.12
COL9A1P20849 KRT7-214ENST00000638501 398 ntTSL 5 BASIC8.04□□□□□ -1.12
COL9A1P20849 PHLDB2-207ENST00000477695 5813 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 MAP3K13-203ENST00000424227 3156 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC8.04□□□□□ -1.12
COL9A1P20849 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC8.04□□□□□ -1.12
COL9A1P20849 IL18R1-201ENST00000233957 3661 ntAPPRIS P1 TSL 5 BASIC8.04□□□□□ -1.12
COL9A1P20849 AC130365.1-201ENST00000530524 1553 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 ERG-201ENST00000288319 4919 ntAPPRIS P3 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC8.04□□□□□ -1.12
COL9A1P20849 ERMAP-203ENST00000372517 3423 ntAPPRIS P2 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 MXRA7-207ENST00000592148 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 HCP5-201ENST00000414046 2658 ntTSL 4 BASIC8.04□□□□□ -1.12
COL9A1P20849 ANKFY1-209ENST00000574367 5033 ntAPPRIS P3 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 PPHLN1-207ENST00000432191 3377 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 LINC00837-201ENST00000443246 3991 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 GTF3C3-201ENST00000263956 4282 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC8.03□□□□□ -1.12
COL9A1P20849 SLIT2-203ENST00000503837 4752 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC8.03□□□□□ -1.12
COL9A1P20849 AL136140.2-201ENST00000624717 1705 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
COL9A1P20849 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 SEMA3E-202ENST00000427262 2414 ntAPPRIS ALT2 TSL 2 BASIC8.03□□□□□ -1.12
COL9A1P20849 PTPRB-201ENST00000261266 6110 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 SLC33A1-202ENST00000392845 9217 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 SYNJ1-211ENST00000630077 6898 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 COL25A1-208ENST00000610288 4799 ntTSL 5 BASIC8.03□□□□□ -1.12
COL9A1P20849 ZNF300-202ENST00000394226 3256 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
COL9A1P20849 AC105074.1-201ENST00000623380 3095 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 CBFA2T2-203ENST00000346541 7737 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 FO393415.1-201ENST00000314481 2255 ntTSL 2 BASIC8.03□□□□□ -1.12
COL9A1P20849 TRPM3-203ENST00000358082 4710 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
COL9A1P20849 TRPM3-213ENST00000396285 4701 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
COL9A1P20849 TRPM3-214ENST00000396292 4740 ntAPPRIS P4 TSL 5 BASIC8.03□□□□□ -1.12
COL9A1P20849 TRPM3-215ENST00000408909 4701 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
COL9A1P20849 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC8.03□□□□□ -1.12
COL9A1P20849 PIGN-230ENST00000638977 4601 ntTSL 5 BASIC8.03□□□□□ -1.12
COL9A1P20849 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 SNORA51.1-201ENST00000363243 140 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 RNVU1-15-201ENST00000384476 165 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 MIR514A2-201ENST00000385131 88 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 MIR514A3-201ENST00000385132 88 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 TRAV38-1-201ENST00000390464 353 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
COL9A1P20849 ATP5J2-203ENST00000394186 305 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
COL9A1P20849 RPL37P10-201ENST00000412884 288 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC8.03□□□□□ -1.12
COL9A1P20849 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC8.03□□□□□ -1.12
COL9A1P20849 AL136133.1-201ENST00000413694 376 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC8.03□□□□□ -1.12
COL9A1P20849 Z93019.1-201ENST00000416450 973 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 AC127537.1-201ENST00000418183 748 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 AL672212.1-201ENST00000422246 400 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC8.03□□□□□ -1.12
COL9A1P20849 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC8.03□□□□□ -1.12
COL9A1P20849 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC8.03□□□□□ -1.12
COL9A1P20849 FABP5P14-201ENST00000437273 393 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 RPS15AP9-201ENST00000439856 381 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 ARL2BPP7-201ENST00000446421 490 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 GAPDHP14-201ENST00000450472 937 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC8.03□□□□□ -1.12
COL9A1P20849 RPL37P3-201ENST00000456825 293 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 AC104339.1-201ENST00000465478 348 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 AC128713.1-201ENST00000471495 306 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 CSF2RA-217ENST00000494969 489 ntTSL 5 BASIC8.03□□□□□ -1.12
COL9A1P20849 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC8.03□□□□□ -1.12
COL9A1P20849 RPL39P5-202ENST00000512505 151 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC8.03□□□□□ -1.12
COL9A1P20849 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC8.03□□□□□ -1.12
COL9A1P20849 OR5F2P-201ENST00000532761 941 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC8.03□□□□□ -1.12
COL9A1P20849 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC8.03□□□□□ -1.12
COL9A1P20849 KCNMA1-AS1-204ENST00000595702 504 ntTSL 5 BASIC8.03□□□□□ -1.12
COL9A1P20849 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC8.03□□□□□ -1.12
COL9A1P20849 MIR6823-201ENST00000622118 61 ntBASIC8.03□□□□□ -1.12
COL9A1P20849 TMEM236-201ENST00000377495 5464 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
COL9A1P20849 ZC4H2-203ENST00000447788 2649 ntTSL 2 BASIC8.03□□□□□ -1.12
COL9A1P20849 SLC11A2-201ENST00000262051 3986 ntAPPRIS ALT1 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 RASSF6-201ENST00000307439 5994 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 CREB3L2-207ENST00000616381 7133 ntTSL 5 BASIC8.03□□□□□ -1.12
COL9A1P20849 AC091940.1-204ENST00000507318 3091 ntTSL 2 BASIC8.03□□□□□ -1.12
COL9A1P20849 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 ATL1-202ENST00000441560 2853 ntAPPRIS ALT1 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 NPEPPS-215ENST00000530173 2864 ntTSL 2 BASIC8.03□□□□□ -1.12
COL9A1P20849 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 ADGRE1-204ENST00000381407 2687 ntTSL 2 BASIC8.03□□□□□ -1.12
COL9A1P20849 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC8.03□□□□□ -1.12
COL9A1P20849 FHL1-206ENST00000394153 2374 ntTSL 5 BASIC8.03□□□□□ -1.12
COL9A1P20849 GIN1-201ENST00000399004 3229 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 USP48-203ENST00000374732 3037 ntTSL 2 BASIC8.03□□□□□ -1.12
COL9A1P20849 PLP1-223ENST00000621218 3001 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
COL9A1P20849 CCDC15-201ENST00000344762 3893 ntAPPRIS P2 TSL 5 BASIC8.03□□□□□ -1.12
COL9A1P20849 MED23-202ENST00000368053 2811 ntTSL 1 (best) BASIC8.02□□□□□ -1.12
COL9A1P20849 ZNF155-209ENST00000611002 2732 ntAPPRIS P3 TSL 4 BASIC8.02□□□□□ -1.12
COL9A1P20849 PCDH15-229ENST00000616114 5846 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.12
COL9A1P20849 KIF13A-204ENST00000378826 5747 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.12
COL9A1P20849 AL450992.1-201ENST00000432386 4109 ntTSL 2 BASIC8.02□□□□□ -1.12
COL9A1P20849 TMEM106A-208ENST00000612339 3266 ntAPPRIS P1 TSL 2 BASIC8.02□□□□□ -1.12
COL9A1P20849 AC117382.2-201ENST00000564748 3151 ntBASIC8.02□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms