Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC009804.1-201ENST00000400949 179 ntBASIC5.37□□□□□ -1.55
MSH3P20585 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.37□□□□□ -1.55
MSH3P20585 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.37□□□□□ -1.55
MSH3P20585 RN7SKP59-201ENST00000410520 314 ntBASIC5.37□□□□□ -1.55
MSH3P20585 CBX1P3-201ENST00000413296 527 ntBASIC5.37□□□□□ -1.55
MSH3P20585 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC5.37□□□□□ -1.55
MSH3P20585 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC5.37□□□□□ -1.55
MSH3P20585 RPL12P18-201ENST00000437175 325 ntBASIC5.37□□□□□ -1.55
MSH3P20585 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.37□□□□□ -1.55
MSH3P20585 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
MSH3P20585 SPRYD7P1-201ENST00000443861 570 ntBASIC5.37□□□□□ -1.55
MSH3P20585 AC104849.1-201ENST00000462623 405 ntBASIC5.37□□□□□ -1.55
MSH3P20585 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.37□□□□□ -1.55
MSH3P20585 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.37□□□□□ -1.55
MSH3P20585 RN7SL447P-201ENST00000494711 245 ntBASIC5.37□□□□□ -1.55
MSH3P20585 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.37□□□□□ -1.55
MSH3P20585 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.37□□□□□ -1.55
MSH3P20585 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.37□□□□□ -1.55
MSH3P20585 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.37□□□□□ -1.55
MSH3P20585 OR8K2P-201ENST00000524645 927 ntBASIC5.37□□□□□ -1.55
MSH3P20585 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.37□□□□□ -1.55
MSH3P20585 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 MTND2P17-201ENST00000550281 688 ntBASIC5.37□□□□□ -1.55
MSH3P20585 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.37□□□□□ -1.55
MSH3P20585 BLZF2P-201ENST00000553776 1130 ntBASIC5.37□□□□□ -1.55
MSH3P20585 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.37□□□□□ -1.55
MSH3P20585 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.37□□□□□ -1.55
MSH3P20585 AC005341.1-201ENST00000571086 708 ntBASIC5.37□□□□□ -1.55
MSH3P20585 AP000769.2-201ENST00000602344 396 ntBASIC5.37□□□□□ -1.55
MSH3P20585 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.37□□□□□ -1.55
MSH3P20585 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC5.37□□□□□ -1.55
MSH3P20585 MIR6768-201ENST00000610734 72 ntBASIC5.37□□□□□ -1.55
MSH3P20585 AC007204.2-201ENST00000615022 616 ntBASIC5.37□□□□□ -1.55
MSH3P20585 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.37□□□□□ -1.55
MSH3P20585 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC5.37□□□□□ -1.55
MSH3P20585 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 MUC2-202ENST00000613187 4845 ntBASIC5.37□□□□□ -1.55
MSH3P20585 TCP11X1-202ENST00000622971 1372 ntBASIC5.37□□□□□ -1.55
MSH3P20585 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSH3P20585 AC024341.1-201ENST00000526444 1552 ntBASIC5.37□□□□□ -1.55
MSH3P20585 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
MSH3P20585 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.36□□□□□ -1.55
MSH3P20585 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
MSH3P20585 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.36□□□□□ -1.55
MSH3P20585 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.36□□□□□ -1.55
MSH3P20585 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 RN7SKP160-201ENST00000363804 340 ntBASIC5.36□□□□□ -1.55
MSH3P20585 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
MSH3P20585 RNU1-77P-201ENST00000390868 162 ntBASIC5.36□□□□□ -1.55
MSH3P20585 SNORA48.4-201ENST00000391089 134 ntBASIC5.36□□□□□ -1.55
MSH3P20585 PPIAP9-201ENST00000403866 498 ntBASIC5.36□□□□□ -1.55
MSH3P20585 AL133388.1-201ENST00000404509 287 ntBASIC5.36□□□□□ -1.55
MSH3P20585 AL139039.2-201ENST00000407436 479 ntBASIC5.36□□□□□ -1.55
MSH3P20585 AL133325.1-201ENST00000421090 382 ntBASIC5.36□□□□□ -1.55
MSH3P20585 PRUNEP1-201ENST00000425846 705 ntBASIC5.36□□□□□ -1.55
MSH3P20585 AL590623.1-201ENST00000427864 105 ntBASIC5.36□□□□□ -1.55
MSH3P20585 CYCSP6-201ENST00000434498 302 ntBASIC5.36□□□□□ -1.55
MSH3P20585 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.36□□□□□ -1.55
MSH3P20585 ZNF736P1Y-201ENST00000440402 1276 ntBASIC5.36□□□□□ -1.55
MSH3P20585 RPS11P7-201ENST00000442125 465 ntBASIC5.36□□□□□ -1.55
MSH3P20585 AL133445.1-201ENST00000467051 452 ntBASIC5.36□□□□□ -1.55
MSH3P20585 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC5.36□□□□□ -1.55
MSH3P20585 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.36□□□□□ -1.55
MSH3P20585 ATG10-AS1-201ENST00000504846 648 ntBASIC5.36□□□□□ -1.55
MSH3P20585 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.36□□□□□ -1.55
MSH3P20585 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.36□□□□□ -1.55
MSH3P20585 EIF4A2P3-201ENST00000525903 1055 ntBASIC5.36□□□□□ -1.55
MSH3P20585 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.36□□□□□ -1.55
MSH3P20585 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.36□□□□□ -1.55
MSH3P20585 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.36□□□□□ -1.55
MSH3P20585 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
MSH3P20585 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
MSH3P20585 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.36□□□□□ -1.55
MSH3P20585 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 MIR6729-201ENST00000618194 65 ntBASIC5.36□□□□□ -1.55
MSH3P20585 AC020978.9-201ENST00000624380 1141 ntBASIC5.36□□□□□ -1.55
MSH3P20585 AP002371.2-201ENST00000624450 503 ntBASIC5.36□□□□□ -1.55
MSH3P20585 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.36□□□□□ -1.55
MSH3P20585 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
MSH3P20585 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
MSH3P20585 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
MSH3P20585 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms