Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.71□□□□□ -1.66
CDX1P47902 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC4.71□□□□□ -1.66
CDX1P47902 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.71□□□□□ -1.66
CDX1P47902 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
CDX1P47902 CASP3P1-201ENST00000446037 609 ntBASIC4.71□□□□□ -1.66
CDX1P47902 AC016027.4-201ENST00000450866 277 ntBASIC4.71□□□□□ -1.66
CDX1P47902 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC4.71□□□□□ -1.66
CDX1P47902 RNU7-27P-201ENST00000459281 62 ntBASIC4.71□□□□□ -1.66
CDX1P47902 RN7SL352P-201ENST00000466002 277 ntBASIC4.71□□□□□ -1.66
CDX1P47902 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC4.71□□□□□ -1.66
CDX1P47902 RPL7AP10-201ENST00000481016 791 ntBASIC4.71□□□□□ -1.66
CDX1P47902 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.71□□□□□ -1.66
CDX1P47902 RPL23AP73-201ENST00000492507 471 ntBASIC4.71□□□□□ -1.66
CDX1P47902 RN7SL591P-201ENST00000496150 292 ntBASIC4.71□□□□□ -1.66
CDX1P47902 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC4.71□□□□□ -1.66
CDX1P47902 AC108471.1-201ENST00000513977 287 ntBASIC4.71□□□□□ -1.66
CDX1P47902 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC4.71□□□□□ -1.66
CDX1P47902 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC4.71□□□□□ -1.66
CDX1P47902 RNA5SP340-201ENST00000517132 107 ntBASIC4.71□□□□□ -1.66
CDX1P47902 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CDX1P47902 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.71□□□□□ -1.66
CDX1P47902 AC060775.1-201ENST00000518241 520 ntBASIC4.71□□□□□ -1.66
CDX1P47902 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC4.71□□□□□ -1.66
CDX1P47902 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC4.71□□□□□ -1.66
CDX1P47902 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.71□□□□□ -1.66
CDX1P47902 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.71□□□□□ -1.66
CDX1P47902 NANOGNBP2-201ENST00000544753 553 ntBASIC4.71□□□□□ -1.66
CDX1P47902 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC4.71□□□□□ -1.66
CDX1P47902 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC4.71□□□□□ -1.66
CDX1P47902 AC233702.9-201ENST00000581528 203 ntBASIC4.71□□□□□ -1.66
CDX1P47902 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC4.71□□□□□ -1.66
CDX1P47902 ZNF92P2-201ENST00000600543 1059 ntBASIC4.71□□□□□ -1.66
CDX1P47902 AL136131.3-201ENST00000607600 188 ntBASIC4.71□□□□□ -1.66
CDX1P47902 MIR6793-201ENST00000612376 63 ntBASIC4.71□□□□□ -1.66
CDX1P47902 AL162574.1-201ENST00000615702 950 ntBASIC4.71□□□□□ -1.66
CDX1P47902 AL122125.1-201ENST00000616999 600 ntBASIC4.71□□□□□ -1.66
CDX1P47902 AP004607.9-201ENST00000618202 316 ntBASIC4.71□□□□□ -1.66
CDX1P47902 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
CDX1P47902 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CDX1P47902 SAMMSON-227ENST00000642114 1199 ntBASIC4.71□□□□□ -1.66
CDX1P47902 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CDX1P47902 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CDX1P47902 AL137141.1-201ENST00000624622 4836 ntBASIC4.71□□□□□ -1.66
CDX1P47902 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC4.71□□□□□ -1.66
CDX1P47902 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CDX1P47902 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC4.7□□□□□ -1.66
CDX1P47902 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CDX1P47902 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
CDX1P47902 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.7□□□□□ -1.66
CDX1P47902 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
CDX1P47902 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC4.7□□□□□ -1.66
CDX1P47902 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CDX1P47902 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CDX1P47902 RNA5SP375-201ENST00000362975 119 ntBASIC4.7□□□□□ -1.66
CDX1P47902 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CDX1P47902 SNORA11.3-201ENST00000408471 128 ntBASIC4.7□□□□□ -1.66
CDX1P47902 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC4.7□□□□□ -1.66
CDX1P47902 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC4.7□□□□□ -1.66
CDX1P47902 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC4.7□□□□□ -1.66
CDX1P47902 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC4.7□□□□□ -1.66
CDX1P47902 AC066692.1-201ENST00000421721 457 ntBASIC4.7□□□□□ -1.66
CDX1P47902 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC4.7□□□□□ -1.66
CDX1P47902 CCNB1IP1P1-201ENST00000428976 839 ntBASIC4.7□□□□□ -1.66
CDX1P47902 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.7□□□□□ -1.66
CDX1P47902 FHP1-201ENST00000442741 703 ntBASIC4.7□□□□□ -1.66
CDX1P47902 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.7□□□□□ -1.66
CDX1P47902 AL445466.1-201ENST00000448432 357 ntBASIC4.7□□□□□ -1.66
CDX1P47902 ACA64.1-201ENST00000459171 127 ntBASIC4.7□□□□□ -1.66
CDX1P47902 AC073594.1-201ENST00000462065 364 ntBASIC4.7□□□□□ -1.66
CDX1P47902 NPM1P29-201ENST00000483112 803 ntBASIC4.7□□□□□ -1.66
CDX1P47902 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.7□□□□□ -1.66
CDX1P47902 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.7□□□□□ -1.66
CDX1P47902 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC4.7□□□□□ -1.66
CDX1P47902 AC027338.1-201ENST00000514840 825 ntBASIC4.7□□□□□ -1.66
CDX1P47902 RNA5SP271-201ENST00000516700 88 ntBASIC4.7□□□□□ -1.66
CDX1P47902 IGLV3-24-201ENST00000517477 197 ntBASIC4.7□□□□□ -1.66
CDX1P47902 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC4.7□□□□□ -1.66
CDX1P47902 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CDX1P47902 VTA1P2-201ENST00000520205 911 ntBASIC4.7□□□□□ -1.66
CDX1P47902 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.7□□□□□ -1.66
CDX1P47902 IGLVIV-66-1-201ENST00000521832 460 ntBASIC4.7□□□□□ -1.66
CDX1P47902 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC4.7□□□□□ -1.66
CDX1P47902 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
CDX1P47902 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC4.7□□□□□ -1.66
CDX1P47902 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.7□□□□□ -1.66
CDX1P47902 AC008083.2-201ENST00000546707 476 ntBASIC4.7□□□□□ -1.66
CDX1P47902 AC125612.1-201ENST00000547580 377 ntBASIC4.7□□□□□ -1.66
CDX1P47902 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC4.7□□□□□ -1.66
CDX1P47902 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC4.7□□□□□ -1.66
CDX1P47902 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
CDX1P47902 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
CDX1P47902 AC106730.2-201ENST00000566641 540 ntBASIC4.7□□□□□ -1.66
CDX1P47902 MTND4LP25-201ENST00000570218 163 ntBASIC4.7□□□□□ -1.66
CDX1P47902 AP005119.1-201ENST00000580956 292 ntBASIC4.7□□□□□ -1.66
CDX1P47902 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC4.7□□□□□ -1.66
CDX1P47902 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC4.7□□□□□ -1.66
CDX1P47902 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC4.7□□□□□ -1.66
CDX1P47902 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC4.7□□□□□ -1.66
CDX1P47902 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC4.7□□□□□ -1.66
CDX1P47902 AC015982.1-201ENST00000608113 465 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms