Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC025016.1-201ENST00000616746 682 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AC242843.1-201ENST00000618702 573 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AC136428.4-201ENST00000634254 1155 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 AP000473.2-201ENST00000602659 1537 ntBASIC5.57□□□□□ -1.52
COL28A1Q2UY09 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL28A1Q2UY09 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 MTND5P23-201ENST00000430812 1655 ntBASIC5.56□□□□□ -1.52
COL28A1Q2UY09 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 PARP4P2-201ENST00000446672 3326 ntBASIC5.56□□□□□ -1.52
COL28A1Q2UY09 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AL356057.1-202ENST00000402263 756 ntBASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AC016739.1-201ENST00000405359 345 ntBASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 CCNB1IP1P1-201ENST00000428976 839 ntBASIC5.56□□□□□ -1.52
COL28A1Q2UY09 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AC007000.2-201ENST00000442564 487 ntBASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 RPL23AP60-201ENST00000450011 454 ntBASIC5.56□□□□□ -1.52
COL28A1Q2UY09 RANP1-206ENST00000455094 651 ntBASIC5.56□□□□□ -1.52
COL28A1Q2UY09 RN7SL222P-201ENST00000476452 299 ntBASIC5.56□□□□□ -1.52
COL28A1Q2UY09 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AC112206.4-201ENST00000515142 405 ntBASIC5.56□□□□□ -1.52
COL28A1Q2UY09 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AC096996.1-201ENST00000563813 325 ntBASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AC242628.1-201ENST00000606810 391 ntBASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AC005021.1-201ENST00000608730 355 ntBASIC5.56□□□□□ -1.52
COL28A1Q2UY09 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL28A1Q2UY09 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 RNU105B-201ENST00000364478 208 ntBASIC5.55□□□□□ -1.52
COL28A1Q2UY09 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 RPS15AP30-201ENST00000420976 390 ntBASIC5.55□□□□□ -1.52
COL28A1Q2UY09 AC016027.5-201ENST00000427227 210 ntBASIC5.55□□□□□ -1.52
COL28A1Q2UY09 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC5.55□□□□□ -1.52
COL28A1Q2UY09 AC016027.4-201ENST00000450866 277 ntBASIC5.55□□□□□ -1.52
COL28A1Q2UY09 AC023245.1-201ENST00000468501 517 ntBASIC5.55□□□□□ -1.52
COL28A1Q2UY09 AC022215.1-201ENST00000481770 362 ntBASIC5.55□□□□□ -1.52
COL28A1Q2UY09 NPM1P28-201ENST00000492269 840 ntBASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms