Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RBPJP5-201ENST00000449433 1447 ntBASIC4.72□□□□□ -1.65
CDX1P47902 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
CDX1P47902 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 AC073136.1-201ENST00000449426 2884 ntBASIC4.72□□□□□ -1.65
CDX1P47902 AL359715.3-201ENST00000569267 2123 ntBASIC4.72□□□□□ -1.65
CDX1P47902 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 FIG4-202ENST00000368941 791 ntTSL 3 BASIC4.72□□□□□ -1.65
CDX1P47902 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 SUGT1P2-201ENST00000379452 992 ntBASIC4.72□□□□□ -1.65
CDX1P47902 AC087752.1-201ENST00000391360 558 ntBASIC4.72□□□□□ -1.65
CDX1P47902 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.72□□□□□ -1.65
CDX1P47902 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.72□□□□□ -1.65
CDX1P47902 RNA5SP296-201ENST00000410523 111 ntBASIC4.72□□□□□ -1.65
CDX1P47902 RN7SKP286-201ENST00000410894 299 ntBASIC4.72□□□□□ -1.65
CDX1P47902 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.72□□□□□ -1.65
CDX1P47902 AC105402.1-201ENST00000413336 545 ntBASIC4.72□□□□□ -1.65
CDX1P47902 GAS5-202ENST00000414075 413 ntTSL 2 BASIC4.72□□□□□ -1.65
CDX1P47902 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC4.72□□□□□ -1.65
CDX1P47902 RPS15AP30-201ENST00000420976 390 ntBASIC4.72□□□□□ -1.65
CDX1P47902 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC4.72□□□□□ -1.65
CDX1P47902 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC4.72□□□□□ -1.65
CDX1P47902 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.72□□□□□ -1.65
CDX1P47902 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.72□□□□□ -1.65
CDX1P47902 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC4.72□□□□□ -1.65
CDX1P47902 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.72□□□□□ -1.65
CDX1P47902 ZNF619P1-201ENST00000446539 752 ntBASIC4.72□□□□□ -1.65
CDX1P47902 RPL23AP23-201ENST00000452590 471 ntBASIC4.72□□□□□ -1.65
CDX1P47902 AC144530.1-201ENST00000452862 555 ntBASIC4.72□□□□□ -1.65
CDX1P47902 RAB28P2-201ENST00000454299 641 ntBASIC4.72□□□□□ -1.65
CDX1P47902 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.72□□□□□ -1.65
CDX1P47902 TPT1P1-201ENST00000458495 518 ntBASIC4.72□□□□□ -1.65
CDX1P47902 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.72□□□□□ -1.65
CDX1P47902 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.72□□□□□ -1.65
CDX1P47902 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.72□□□□□ -1.65
CDX1P47902 AC090568.1-201ENST00000509499 856 ntBASIC4.72□□□□□ -1.65
CDX1P47902 RNU6-1102P-201ENST00000516149 96 ntBASIC4.72□□□□□ -1.65
CDX1P47902 RN7SKP141-201ENST00000516167 338 ntBASIC4.72□□□□□ -1.65
CDX1P47902 SCARNA18.1-201ENST00000516330 83 ntBASIC4.72□□□□□ -1.65
CDX1P47902 snoU109.6-201ENST00000516831 118 ntBASIC4.72□□□□□ -1.65
CDX1P47902 RNU6-467P-201ENST00000517027 110 ntBASIC4.72□□□□□ -1.65
CDX1P47902 SNORA76.2-201ENST00000517095 137 ntBASIC4.72□□□□□ -1.65
CDX1P47902 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC4.72□□□□□ -1.65
CDX1P47902 ARL6IP1P3-201ENST00000524544 560 ntBASIC4.72□□□□□ -1.65
CDX1P47902 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC4.72□□□□□ -1.65
CDX1P47902 AC244502.2-201ENST00000543361 851 ntBASIC4.72□□□□□ -1.65
CDX1P47902 AC025918.2-201ENST00000558683 763 ntBASIC4.72□□□□□ -1.65
CDX1P47902 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC4.72□□□□□ -1.65
CDX1P47902 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.72□□□□□ -1.65
CDX1P47902 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC4.72□□□□□ -1.65
CDX1P47902 MIR6133-201ENST00000617057 108 ntBASIC4.72□□□□□ -1.65
CDX1P47902 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC4.72□□□□□ -1.65
CDX1P47902 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC4.72□□□□□ -1.65
CDX1P47902 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC4.72□□□□□ -1.65
CDX1P47902 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC4.72□□□□□ -1.65
CDX1P47902 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC4.72□□□□□ -1.65
CDX1P47902 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 GNL2P1-201ENST00000451274 2190 ntBASIC4.72□□□□□ -1.65
CDX1P47902 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.72□□□□□ -1.65
CDX1P47902 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CDX1P47902 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
CDX1P47902 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC4.72□□□□□ -1.65
CDX1P47902 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC4.72□□□□□ -1.65
CDX1P47902 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC4.72□□□□□ -1.65
CDX1P47902 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC4.72□□□□□ -1.65
CDX1P47902 SLC9B1P1-201ENST00000331172 1337 ntBASIC4.72□□□□□ -1.65
CDX1P47902 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CDX1P47902 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.65
CDX1P47902 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
CDX1P47902 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.65
CDX1P47902 AC024587.1-201ENST00000505925 2157 ntBASIC4.71□□□□□ -1.65
CDX1P47902 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
CDX1P47902 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.71□□□□□ -1.66
CDX1P47902 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
CDX1P47902 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CDX1P47902 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
CDX1P47902 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
CDX1P47902 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CDX1P47902 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
CDX1P47902 TPT1-204ENST00000379060 764 ntTSL 5 BASIC4.71□□□□□ -1.66
CDX1P47902 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC4.71□□□□□ -1.66
CDX1P47902 RNU4-31P-201ENST00000384211 141 ntBASIC4.71□□□□□ -1.66
CDX1P47902 RNU6-225P-201ENST00000384613 103 ntBASIC4.71□□□□□ -1.66
CDX1P47902 HMGN1P20-201ENST00000411849 300 ntBASIC4.71□□□□□ -1.66
CDX1P47902 TATDN1P1-201ENST00000414123 891 ntBASIC4.71□□□□□ -1.66
CDX1P47902 HYALP1-201ENST00000417674 1279 ntBASIC4.71□□□□□ -1.66
CDX1P47902 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CDX1P47902 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.71□□□□□ -1.66
CDX1P47902 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms