Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC6.59□□□□□ -1.35
COL18A1P39060 AC138907.8-201ENST00000623981 2256 ntBASIC6.59□□□□□ -1.35
COL18A1P39060 AC091046.3-201ENST00000631455 1574 ntBASIC6.59□□□□□ -1.35
COL18A1P39060 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL18A1P39060 RNA5-8SP7-201ENST00000363443 155 ntBASIC6.59□□□□□ -1.35
COL18A1P39060 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC6.59□□□□□ -1.35
COL18A1P39060 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.59□□□□□ -1.35
COL18A1P39060 AL592293.2-201ENST00000422292 996 ntBASIC6.59□□□□□ -1.35
COL18A1P39060 AC099670.2-201ENST00000435130 321 ntBASIC6.59□□□□□ -1.35
COL18A1P39060 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC6.59□□□□□ -1.35
COL18A1P39060 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC6.59□□□□□ -1.35
COL18A1P39060 FGB-207ENST00000509493 1164 ntTSL 5 BASIC6.59□□□□□ -1.35
COL18A1P39060 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC6.59□□□□□ -1.35
COL18A1P39060 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
COL18A1P39060 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC6.59□□□□□ -1.35
COL18A1P39060 SS18L2P2-201ENST00000583960 235 ntBASIC6.59□□□□□ -1.35
COL18A1P39060 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC6.59□□□□□ -1.35
COL18A1P39060 AC068724.3-201ENST00000625906 87 ntBASIC6.59□□□□□ -1.35
COL18A1P39060 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL18A1P39060 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
COL18A1P39060 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL18A1P39060 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL18A1P39060 NCKAP1-202ENST00000361354 20347 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL18A1P39060 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
COL18A1P39060 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.58□□□□□ -1.36
COL18A1P39060 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL18A1P39060 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL18A1P39060 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC6.58□□□□□ -1.36
COL18A1P39060 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
COL18A1P39060 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL18A1P39060 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
COL18A1P39060 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL18A1P39060 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL18A1P39060 AL354868.1-201ENST00000417077 482 ntBASIC6.58□□□□□ -1.36
COL18A1P39060 SCAND3P1-201ENST00000439854 1060 ntBASIC6.58□□□□□ -1.36
COL18A1P39060 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC6.58□□□□□ -1.36
COL18A1P39060 AC104971.1-201ENST00000495117 578 ntBASIC6.58□□□□□ -1.36
COL18A1P39060 SCARNA9-201ENST00000530422 353 ntBASIC6.58□□□□□ -1.36
COL18A1P39060 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC6.58□□□□□ -1.36
COL18A1P39060 MIR1254-2-201ENST00000579553 63 ntBASIC6.58□□□□□ -1.36
COL18A1P39060 MLECP1-201ENST00000615893 709 ntBASIC6.58□□□□□ -1.36
COL18A1P39060 AC087821.1-201ENST00000623639 567 ntBASIC6.58□□□□□ -1.36
COL18A1P39060 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC6.58□□□□□ -1.36
COL18A1P39060 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL18A1P39060 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL18A1P39060 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC6.58□□□□□ -1.36
COL18A1P39060 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL18A1P39060 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL18A1P39060 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL18A1P39060 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
COL18A1P39060 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL18A1P39060 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC6.57□□□□□ -1.36
COL18A1P39060 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
COL18A1P39060 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL18A1P39060 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
COL18A1P39060 U3.32-201ENST00000408116 212 ntBASIC6.57□□□□□ -1.36
COL18A1P39060 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC6.57□□□□□ -1.36
COL18A1P39060 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC6.57□□□□□ -1.36
COL18A1P39060 RN7SL41P-201ENST00000476144 297 ntBASIC6.57□□□□□ -1.36
COL18A1P39060 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC6.57□□□□□ -1.36
COL18A1P39060 OR8Q1P-201ENST00000526467 655 ntBASIC6.57□□□□□ -1.36
COL18A1P39060 AC020915.5-201ENST00000596836 964 ntBASIC6.57□□□□□ -1.36
COL18A1P39060 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC6.57□□□□□ -1.36
COL18A1P39060 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL18A1P39060 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC6.57□□□□□ -1.36
COL18A1P39060 DTHD1-201ENST00000357504 3203 ntTSL 2 BASIC6.57□□□□□ -1.36
COL18A1P39060 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL18A1P39060 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC6.57□□□□□ -1.36
COL18A1P39060 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC6.57□□□□□ -1.36
COL18A1P39060 AC125257.1-201ENST00000560400 2930 ntBASIC6.57□□□□□ -1.36
COL18A1P39060 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL18A1P39060 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL18A1P39060 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL18A1P39060 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL18A1P39060 RNA5SP447-201ENST00000363749 119 ntBASIC6.57□□□□□ -1.36
COL18A1P39060 AC009238.2-201ENST00000431026 355 ntBASIC6.57□□□□□ -1.36
COL18A1P39060 AC073143.1-201ENST00000436316 395 ntBASIC6.57□□□□□ -1.36
COL18A1P39060 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC6.57□□□□□ -1.36
COL18A1P39060 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC6.57□□□□□ -1.36
COL18A1P39060 snoU13.29-201ENST00000459370 104 ntBASIC6.57□□□□□ -1.36
COL18A1P39060 AC010326.1-201ENST00000462726 602 ntBASIC6.57□□□□□ -1.36
COL18A1P39060 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC6.57□□□□□ -1.36
COL18A1P39060 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC6.57□□□□□ -1.36
COL18A1P39060 RN7SKP92-201ENST00000517266 244 ntBASIC6.57□□□□□ -1.36
COL18A1P39060 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC6.57□□□□□ -1.36
COL18A1P39060 AC068831.4-201ENST00000556118 109 ntBASIC6.57□□□□□ -1.36
COL18A1P39060 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC6.57□□□□□ -1.36
COL18A1P39060 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC6.57□□□□□ -1.36
COL18A1P39060 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC6.57□□□□□ -1.36
COL18A1P39060 RN7SL802P-201ENST00000577858 299 ntBASIC6.57□□□□□ -1.36
COL18A1P39060 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC6.57□□□□□ -1.36
COL18A1P39060 AC108359.1-201ENST00000616451 1211 ntBASIC6.57□□□□□ -1.36
COL18A1P39060 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL18A1P39060 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC6.57□□□□□ -1.36
COL18A1P39060 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL18A1P39060 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL18A1P39060 AC009779.8-201ENST00000641684 4384 ntBASIC6.56□□□□□ -1.36
COL18A1P39060 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
COL18A1P39060 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL18A1P39060 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms