Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS4BO75351 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS4BO75351 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS4BO75351 AC000095.2-202ENST00000637415 154 ntBASIC5.89□□□□□ -1.47
VPS4BO75351 AC017104.5-201ENST00000637647 639 ntBASIC5.89□□□□□ -1.47
VPS4BO75351 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS4BO75351 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.89□□□□□ -1.47
VPS4BO75351 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.89□□□□□ -1.47
VPS4BO75351 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
VPS4BO75351 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS4BO75351 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS4BO75351 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS4BO75351 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS4BO75351 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS4BO75351 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS4BO75351 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS4BO75351 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
VPS4BO75351 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 HSPD1P11-201ENST00000508643 1702 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS4BO75351 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.88□□□□□ -1.47
VPS4BO75351 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 MTHFD2P5-201ENST00000320415 844 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
VPS4BO75351 SUGT1P2-201ENST00000379452 992 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 RNU6-1005P-201ENST00000384519 107 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 RNA5SP284-201ENST00000384547 118 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
VPS4BO75351 RNU4-74P-201ENST00000411280 161 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 AC245096.1-201ENST00000413104 546 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 DHFRP2-201ENST00000414224 547 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS4BO75351 XKRYP4-201ENST00000414395 483 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 MTCO2P21-201ENST00000419780 677 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 AC005005.2-201ENST00000420779 380 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 PNRC2P1-201ENST00000423940 420 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS4BO75351 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS4BO75351 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 GAPDHP48-201ENST00000436626 961 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC5.88□□□□□ -1.47
VPS4BO75351 AL353898.1-201ENST00000444055 238 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
VPS4BO75351 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS4BO75351 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS4BO75351 XKRYP5-201ENST00000449659 483 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 HLA-DPA3-207ENST00000454398 229 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS4BO75351 ST13P12-201ENST00000508958 1094 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS4BO75351 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS4BO75351 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS4BO75351 RNA5SP271-201ENST00000516700 88 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 RN7SKP35-201ENST00000517210 151 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS4BO75351 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS4BO75351 AC090022.1-201ENST00000546569 311 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS4BO75351 MTCYBP23-201ENST00000558717 1102 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS4BO75351 AC092332.1-201ENST00000563684 829 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS4BO75351 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS4BO75351 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS4BO75351 AC027455.1-201ENST00000574104 594 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS4BO75351 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS4BO75351 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS4BO75351 AC005224.3-201ENST00000584683 2140 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS4BO75351 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS4BO75351 AC119403.2-201ENST00000590960 598 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 MIR6798-201ENST00000612887 67 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 AC241377.1-201ENST00000619797 406 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS4BO75351 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 AC129915.3-201ENST00000634128 948 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 FBXL21-201ENST00000297158 1305 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS4BO75351 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS4BO75351 AL158152.1-201ENST00000602652 1435 ntBASIC5.88□□□□□ -1.47
VPS4BO75351 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
VPS4BO75351 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.88□□□□□ -1.47
VPS4BO75351 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS4BO75351 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS4BO75351 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS4BO75351 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
VPS4BO75351 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS4BO75351 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms