Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 7SK.12-201ENST00000612820 244 ntBASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 METAP1-212ENST00000625963 147 ntTSL 5 BASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 SOX6-210ENST00000528252 2707 ntAPPRIS ALT2 TSL 2 BASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 MAPK10-354ENST00000641823 2732 ntBASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 C1S-205ENST00000406697 3076 ntAPPRIS P1 TSL 2 BASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 DDX18P4-201ENST00000511690 1966 ntBASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 AMPD3-202ENST00000396553 3680 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 AC130464.1-201ENST00000416201 1500 ntBASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 PHF2P2-202ENST00000444553 2865 ntBASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 BDNF-213ENST00000525950 3829 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 CACYBP-209ENST00000613570 2835 ntTSL 2 BASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 AC004941.1-201ENST00000417506 3120 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 GPR151-201ENST00000311104 3088 ntAPPRIS P1 BASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC7.87□□□□□ -1.15
LIMD1Q9UGP4 LINC01924-201ENST00000589376 1722 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 ADGRE1-201ENST00000250572 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 CFAP61-210ENST00000451767 1946 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 DCAF5-208ENST00000556847 2791 ntTSL 5 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AL031123.2-201ENST00000563225 3325 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC087203.2-201ENST00000526502 1587 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 TTR-201ENST00000237014 957 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 TRAV38-1-201ENST00000390464 353 ntAPPRIS P1 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 RNU6-332P-201ENST00000391193 108 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 FCAR-205ENST00000391723 754 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 RSPH14-202ENST00000406876 519 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 MIR320C1-201ENST00000408566 88 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AL355862.1-201ENST00000412705 353 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 LINC01384-201ENST00000422494 659 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AL773545.1-201ENST00000425632 347 ntTSL 5 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 RPS27AP6-201ENST00000427962 448 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC133104.1-201ENST00000429100 218 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AL022324.2-201ENST00000434827 780 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 CBX1P1-201ENST00000440184 427 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 FREM2-AS1-201ENST00000448887 465 ntTSL 2 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 RPSAP48-201ENST00000466509 889 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 RN7SL233P-201ENST00000469988 277 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC084878.1-201ENST00000480555 648 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 CREM-242ENST00000490511 469 ntTSL 2 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 RN7SL649P-201ENST00000496974 275 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 SUMO2P17-201ENST00000504438 285 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC107952.1-201ENST00000524200 376 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AP000879.2-201ENST00000530525 497 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC115676.1-201ENST00000538416 329 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC011595.1-201ENST00000548901 753 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 HIF1AP1-201ENST00000553642 175 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 DPPA3P2-202ENST00000557188 1219 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC037471.2-201ENST00000564941 598 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 MIR544B-201ENST00000582372 78 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 H3F3BP2-201ENST00000583907 357 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC011933.4-201ENST00000585081 403 ntTSL 3 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AL133338.2-201ENST00000604292 736 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC007621.1-201ENST00000604544 437 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC009779.8-202ENST00000607990 932 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 STARD13-AS-232ENST00000609137 882 ntTSL 5 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC093788.1-201ENST00000609356 927 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC243773.3-201ENST00000613270 256 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 MIR7973-1-201ENST00000614683 76 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AL158801.5-201ENST00000623123 465 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC063952.1-203ENST00000634410 658 ntBASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 JAML-213ENST00000640745 951 ntTSL 5 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 USP32P2-201ENST00000412260 4329 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 ETS1-202ENST00000392668 5139 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms