Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 OOSP1-201ENST00000398992 1270 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 RPL10P10-201ENST00000403509 664 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 RN7SKP240-201ENST00000410583 375 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 NPM1P40-201ENST00000412758 733 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 OR5M12P-201ENST00000423388 929 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 NANOGP4-201ENST00000427230 913 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 FTLP19-201ENST00000433300 394 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 RPS29P10-201ENST00000439197 166 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 AL390119.1-201ENST00000440329 312 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC42Q96M95 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC42Q96M95 AC097173.1-201ENST00000505862 819 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 RNA5SP373-201ENST00000517271 95 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 AC040934.1-201ENST00000523101 513 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 AC100767.2-201ENST00000604840 693 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 AC010245.2-201ENST00000606908 1167 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC42Q96M95 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC42Q96M95 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC42Q96M95 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
CCDC42Q96M95 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC42Q96M95 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC42Q96M95 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.55□□□□□ -1.52
CCDC42Q96M95 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC42Q96M95 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC42Q96M95 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.55□□□□□ -1.52
CCDC42Q96M95 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC42Q96M95 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC42Q96M95 RNA5SP335-201ENST00000363817 110 ntBASIC5.55□□□□□ -1.52
CCDC42Q96M95 RN7SKP292-201ENST00000365522 317 ntBASIC5.55□□□□□ -1.52
CCDC42Q96M95 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
CCDC42Q96M95 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC42Q96M95 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
CCDC42Q96M95 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
CCDC42Q96M95 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC42Q96M95 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC42Q96M95 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC42Q96M95 AL139148.1-201ENST00000427122 680 ntBASIC5.55□□□□□ -1.52
CCDC42Q96M95 COX6CP13-201ENST00000428703 226 ntBASIC5.55□□□□□ -1.52
CCDC42Q96M95 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC42Q96M95 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.55□□□□□ -1.52
CCDC42Q96M95 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC42Q96M95 AC091180.1-201ENST00000462104 372 ntBASIC5.55□□□□□ -1.52
CCDC42Q96M95 AC005412.2-201ENST00000492004 341 ntBASIC5.55□□□□□ -1.52
CCDC42Q96M95 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC42Q96M95 AC012400.1-201ENST00000518452 381 ntBASIC5.55□□□□□ -1.52
CCDC42Q96M95 BNIP3P1-201ENST00000547295 580 ntBASIC5.55□□□□□ -1.52
CCDC42Q96M95 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC42Q96M95 AC134669.1-201ENST00000581275 672 ntBASIC5.55□□□□□ -1.52
CCDC42Q96M95 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC42Q96M95 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.55□□□□□ -1.52
CCDC42Q96M95 AL022393.1-201ENST00000625142 1677 ntBASIC5.55□□□□□ -1.52
CCDC42Q96M95 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC42Q96M95 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC42Q96M95 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC42Q96M95 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC42Q96M95 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC42Q96M95 CASC19-221ENST00000641309 1382 ntBASIC5.55□□□□□ -1.52
CCDC42Q96M95 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC42Q96M95 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
CCDC42Q96M95 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC42Q96M95 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC42Q96M95 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC42Q96M95 AC083843.2-201ENST00000568248 6253 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
CCDC42Q96M95 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC42Q96M95 RNA5SP234-201ENST00000363916 119 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC42Q96M95 SETP15-201ENST00000412724 337 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC42Q96M95 RPS3P2-201ENST00000421346 701 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC42Q96M95 AC064862.4-201ENST00000442180 334 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 RPL36AP39-201ENST00000445859 318 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC42Q96M95 BTF3P6-201ENST00000448054 499 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 RANP1-206ENST00000455094 651 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 RPL5P22-201ENST00000480199 884 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 OR11I1P-201ENST00000486033 954 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 AC073073.1-201ENST00000493920 463 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 RN7SL447P-201ENST00000494711 245 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 PSMA2P2-201ENST00000504319 686 ntBASIC5.54□□□□□ -1.52
CCDC42Q96M95 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms