Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HMGN1P36-201ENST00000446623 298 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 PROX1-AS1-203ENST00000451396 476 ntTSL 5 BASIC6.62□□□□□ -1.35
COL8A1P27658 PMS2P11-201ENST00000451831 574 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 SEPT14P2-201ENST00000453405 183 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 AC013727.1-202ENST00000455716 580 ntTSL 4 BASIC6.62□□□□□ -1.35
COL8A1P27658 GH2-204ENST00000456543 794 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 AC079594.1-201ENST00000489757 331 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 RN7SL350P-201ENST00000492591 299 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC6.62□□□□□ -1.35
COL8A1P27658 OR7E99P-201ENST00000505750 922 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC6.62□□□□□ -1.35
COL8A1P27658 AC107222.1-201ENST00000510899 637 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 SNORA81.2-201ENST00000516868 170 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC6.62□□□□□ -1.35
COL8A1P27658 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 AC138832.1-201ENST00000522871 556 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 FO082796.1-201ENST00000523795 183 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC6.62□□□□□ -1.35
COL8A1P27658 PHBP17-201ENST00000528576 541 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 AC022878.1-201ENST00000530684 149 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 AP001257.1-201ENST00000533106 385 ntTSL 3 BASIC6.62□□□□□ -1.35
COL8A1P27658 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC6.62□□□□□ -1.35
COL8A1P27658 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC6.62□□□□□ -1.35
COL8A1P27658 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC6.62□□□□□ -1.35
COL8A1P27658 MIR4666A-201ENST00000580160 79 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 LINC00663-206ENST00000589910 732 ntTSL 2 BASIC6.62□□□□□ -1.35
COL8A1P27658 AL391646.1-201ENST00000603860 190 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 Z84480.1-201ENST00000605131 311 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 AC018695.5-201ENST00000605872 315 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 AC113361.1-201ENST00000606683 543 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC6.62□□□□□ -1.35
COL8A1P27658 AL132796.3-201ENST00000624703 900 ntBASIC6.62□□□□□ -1.35
COL8A1P27658 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 PALM2-AKAP2-201ENST00000302798 4718 ntTSL 2 BASIC6.62□□□□□ -1.35
COL8A1P27658 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC6.62□□□□□ -1.35
COL8A1P27658 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 ZNF845-202ENST00000595091 4413 ntAPPRIS P1 TSL 4 BASIC6.62□□□□□ -1.35
COL8A1P27658 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
COL8A1P27658 TCF4-246ENST00000570287 3163 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 NANOG-201ENST00000229307 5183 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 NLK-201ENST00000407008 4047 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
COL8A1P27658 MMP20-201ENST00000260228 1956 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 BRS3-201ENST00000370648 2833 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 GPR19-201ENST00000332427 1743 ntAPPRIS P1 TSL 4 BASIC6.62□□□□□ -1.35
COL8A1P27658 EIF4E2-202ENST00000409098 3448 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL8A1P27658 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL8A1P27658 LINC00294-201ENST00000631190 3306 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 TNS4-201ENST00000254051 4067 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL8A1P27658 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL8A1P27658 ANKS1B-211ENST00000547776 3885 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL8A1P27658 ESRP1-202ENST00000423620 3746 ntAPPRIS ALT1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL8A1P27658 SERPINA11-201ENST00000334708 1476 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL8A1P27658 AC131649.2-201ENST00000624925 4439 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 UTP23-201ENST00000309822 3699 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL8A1P27658 SAMMSON-203ENST00000641005 2168 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 SCARB2-211ENST00000638603 4284 ntTSL 5 BASIC6.61□□□□□ -1.35
COL8A1P27658 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC6.61□□□□□ -1.35
COL8A1P27658 MYOCD-203ENST00000425538 8466 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL8A1P27658 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL8A1P27658 ELL2P4-201ENST00000446870 1376 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 ERV3-1-201ENST00000394323 2719 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
COL8A1P27658 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL8A1P27658 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL8A1P27658 OR5A1-201ENST00000302030 1051 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
COL8A1P27658 OR10J3-201ENST00000332217 990 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
COL8A1P27658 RNU6-1322P-201ENST00000364309 107 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 Y_RNA.307-201ENST00000365022 117 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 SNORA30-201ENST00000384028 129 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 RPS3AP5-201ENST00000389400 821 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 RNU6-510P-201ENST00000391239 108 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 AL450338.1-201ENST00000407987 512 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 NAP1L1P2-201ENST00000414182 1089 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 YWHAZP3-201ENST00000415292 738 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 VAV3-203ENST00000415432 1293 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL8A1P27658 PIGFP2-201ENST00000421400 651 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 BEND7P1-201ENST00000422058 457 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 BX890604.2-201ENST00000427883 474 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC6.61□□□□□ -1.35
COL8A1P27658 RAB28P3-201ENST00000448325 597 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 AL354714.5-201ENST00000450131 590 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 BTF3P15-201ENST00000455606 336 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC6.61□□□□□ -1.35
COL8A1P27658 RPS20P4-201ENST00000461659 355 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 HMGN2P26-201ENST00000463169 339 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 RPL7P39-201ENST00000481157 744 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 RPL29P23-201ENST00000486188 442 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 RPS3P7-201ENST00000488662 726 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC6.61□□□□□ -1.35
COL8A1P27658 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC6.61□□□□□ -1.35
COL8A1P27658 AC107220.1-201ENST00000514347 1037 ntTSL 3 BASIC6.61□□□□□ -1.35
COL8A1P27658 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC6.61□□□□□ -1.35
COL8A1P27658 OR6M2P-201ENST00000529831 871 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 AC079089.1-203ENST00000533300 431 ntTSL 5 BASIC6.61□□□□□ -1.35
COL8A1P27658 AC087241.2-201ENST00000535801 324 ntBASIC6.61□□□□□ -1.35
COL8A1P27658 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.61□□□□□ -1.35
COL8A1P27658 PRR13-204ENST00000547368 688 ntAPPRIS ALT2 TSL 3 BASIC6.61□□□□□ -1.35
COL8A1P27658 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC6.61□□□□□ -1.35
COL8A1P27658 LRP1-AS-201ENST00000554476 325 ntTSL 3 BASIC6.61□□□□□ -1.35
COL8A1P27658 AC122685.1-202ENST00000556750 555 ntTSL 2 BASIC6.61□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms