RNA–Protein interactions for RNA: ENST00000570287.6

TCF4-246, Transcript of transcription factor 4, humanhuman

TSL 1 (best) BASIC

Gene TCF4, Length 3,163 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-246ENST00000570287 CHIC1Q5VXU3 224 aa18.27■□□□□ 0.52
TCF4-246ENST00000570287 AEBP2Q6ZN18 517 aaPredicted RBP17.66■□□□□ 0.42
TCF4-246ENST00000570287 PHF23Q9BUL5 403 aaPredicted RBP16.58■□□□□ 0.24
TCF4-246ENST00000570287 EHMT2Q96KQ7 1210 aa16.53■□□□□ 0.24
TCF4-246ENST00000570287 NISCHQ9Y2I1 1504 aa16.49■□□□□ 0.23
TCF4-246ENST00000570287 SLC24A1O60721 1099 aa16.35■□□□□ 0.21
TCF4-246ENST00000570287 PLPPR3Q6T4P5 718 aa15.78■□□□□ 0.12
TCF4-246ENST00000570287 KCNA4P22459 653 aa15.56■□□□□ 0.08
TCF4-246ENST00000570287 CSRNP3Q8WYN3 585 aa15.45■□□□□ 0.06
TCF4-246ENST00000570287 RTN4Q9NQC3 1192 aaKnown RBP15.45■□□□□ 0.06
TCF4-246ENST00000570287 ADRA2BP18089 450 aa14.95□□□□□ -0.02
TCF4-246ENST00000570287 AMER1Q5JTC6 1135 aaPredicted RBP14.87□□□□□ -0.03
TCF4-246ENST00000570287 SLC4A1APQ9BWU0 796 aaKnown RBP14.82□□□□□ -0.04
TCF4-246ENST00000570287 PRKCSHP14314 528 aaPredicted RBP14.57□□□□□ -0.08
TCF4-246ENST00000570287 NCBP3Q53F19 620 aaKnown RBP14.52□□□□□ -0.08
TCF4-246ENST00000570287 ZBTB22O15209 634 aa14.48□□□□□ -0.09
TCF4-246ENST00000570287 PPP6R1Q9UPN7 881 aa14.28□□□□□ -0.12
TCF4-246ENST00000570287 SENP3Q9H4L4 574 aaPredicted RBP14.21□□□□□ -0.14
TCF4-246ENST00000570287 CCDC180Q9P1Z9 1646 aa14.17□□□□□ -0.14
TCF4-246ENST00000570287 DAXXQ9UER7 740 aaPredicted RBP14.13□□□□□ -0.15
TCF4-246ENST00000570287 NPM3O75607 178 aaKnown RBP14.01□□□□□ -0.17
TCF4-246ENST00000570287 TAOK2Q9UL54 1235 aa13.99□□□□□ -0.17
TCF4-246ENST00000570287 TIMELESSQ9UNS1 1208 aa13.97□□□□□ -0.17
TCF4-246ENST00000570287 ZCCHC6Q5VYS8 1495 aaKnown RBP13.93□□□□□ -0.18
TCF4-246ENST00000570287 PPP4R3CPQ6ZMV5 832 aa13.91□□□□□ -0.18
TCF4-246ENST00000570287 FKBP8Q14318 412 aa13.84□□□□□ -0.19
TCF4-246ENST00000570287 PLCB2Q00722 1185 aa13.83□□□□□ -0.2
TCF4-246ENST00000570287 TPRNQ4KMQ1 711 aa13.83□□□□□ -0.2
TCF4-246ENST00000570287 TULP1O00294 542 aaPredicted RBP13.78□□□□□ -0.2
TCF4-246ENST00000570287 BCANQ96GW7 911 aa13.77□□□□□ -0.21
TCF4-246ENST00000570287 SHROOM4Q9ULL8 1493 aa13.75□□□□□ -0.21
TCF4-246ENST00000570287 HAP1P54257 671 aaPredicted RBP13.74□□□□□ -0.21
TCF4-246ENST00000570287 DCAF1Q9Y4B6 1507 aa13.62□□□□□ -0.23
TCF4-246ENST00000570287 ARXQ96QS3 562 aa13.58□□□□□ -0.24
TCF4-246ENST00000570287 FOXD4L1Q9NU39 408 aa13.53□□□□□ -0.24
TCF4-246ENST00000570287 DCAF8L2P0C7V8 631 aa13.52□□□□□ -0.25
TCF4-246ENST00000570287 PELP1Q8IZL8 1130 aaKnown RBP13.46□□□□□ -0.25
TCF4-246ENST00000570287 MYT1Q01538 1121 aa13.46□□□□□ -0.26
TCF4-246ENST00000570287 SUPT5HO00267 1087 aaKnown RBP13.44□□□□□ -0.26
TCF4-246ENST00000570287 KDM2AQ9Y2K7 1162 aa13.39□□□□□ -0.27
TCF4-246ENST00000570287 FOXD1Q16676 465 aa13.38□□□□□ -0.27
TCF4-246ENST00000570287 FBLN2P98095 1184 aa13.36□□□□□ -0.27
TCF4-246ENST00000570287 GTF3C3Q9Y5Q9 886 aa13.33□□□□□ -0.28
TCF4-246ENST00000570287 MYO15BQ96JP2 1530 aa13.31□□□□□ -0.28
TCF4-246ENST00000570287 HOMEZQ8IX15 550 aa13.25□□□□□ -0.29
TCF4-246ENST00000570287 VSIG10Q8N0Z9 540 aa13.23□□□□□ -0.29
TCF4-246ENST00000570287 TTBK1Q5TCY1 1321 aaPredicted RBP13.23□□□□□ -0.29
TCF4-246ENST00000570287 HRCP23327 699 aa13.14□□□□□ -0.31
TCF4-246ENST00000570287 ABCC9O60706 1549 aa13.11□□□□□ -0.31
TCF4-246ENST00000570287 NACADO15069 1562 aa13.11□□□□□ -0.31
TCF4-246ENST00000570287 SCRIBQ14160 1630 aa13.11□□□□□ -0.31
TCF4-246ENST00000570287 PODXL2Q9NZ53 605 aa13.1□□□□□ -0.31
TCF4-246ENST00000570287 TMEM132AQ24JP5 1023 aa13.05□□□□□ -0.32
TCF4-246ENST00000570287 KLHL34Q8N239 644 aa13.02□□□□□ -0.33
TCF4-246ENST00000570287 CNKSR2Q8WXI2 1034 aa12.99□□□□□ -0.33
TCF4-246ENST00000570287 RANGAP1P46060 587 aaPredicted RBP12.95□□□□□ -0.34
TCF4-246ENST00000570287 RSF1Q96T23 1441 aaPredicted RBP12.95□□□□□ -0.34
TCF4-246ENST00000570287 C14orf37Q86TY3 774 aa12.95□□□□□ -0.34
TCF4-246ENST00000570287 PIAS4Q8N2W9 510 aaPredicted RBP12.93□□□□□ -0.34
TCF4-246ENST00000570287 RB1CC1Q8TDY2 1594 aa12.91□□□□□ -0.34
TCF4-246ENST00000570287 PAXIP1Q6ZW49 1069 aaPredicted RBP12.88□□□□□ -0.35
TCF4-246ENST00000570287 CFAP44Q96MT7 982 aa12.88□□□□□ -0.35
TCF4-246ENST00000570287 APLP2Q06481 763 aa12.87□□□□□ -0.35
TCF4-246ENST00000570287 TSHZ2Q9NRE2 1034 aa12.84□□□□□ -0.35
TCF4-246ENST00000570287 PKD2Q13563 968 aa12.83□□□□□ -0.35
TCF4-246ENST00000570287 SLC4A2P04920 1241 aa12.83□□□□□ -0.36
TCF4-246ENST00000570287 NPM1P06748 294 aaKnown RBP eCLIP12.83□□□□□ -0.36
TCF4-246ENST00000570287 CECR2Q9BXF3 1484 aa12.79□□□□□ -0.36
TCF4-246ENST00000570287 MROH2BQ7Z745 1585 aa12.76□□□□□ -0.37
TCF4-246ENST00000570287 UBTFP17480 764 aaKnown RBP12.71□□□□□ -0.38
TCF4-246ENST00000570287 TRIM26Q12899 539 aaPredicted RBP12.71□□□□□ -0.38
TCF4-246ENST00000570287 IFNLR1Q8IU57 520 aaPredicted RBP12.7□□□□□ -0.38
TCF4-246ENST00000570287 BAZ1AQ9NRL2 1556 aaPredicted RBP12.7□□□□□ -0.38
TCF4-246ENST00000570287 WIZO95785 1651 aa12.68□□□□□ -0.38
TCF4-246ENST00000570287 UNC13AQ9UPW8 1703 aa12.67□□□□□ -0.38
TCF4-246ENST00000570287 PPARGC1BQ86YN6 1023 aaKnown RBP12.67□□□□□ -0.38
TCF4-246ENST00000570287 NPM2Q86SE8 214 aaKnown RBP12.66□□□□□ -0.38
TCF4-246ENST00000570287 NBR1Q14596 966 aa12.65□□□□□ -0.38
TCF4-246ENST00000570287 ERICH6Q7L0X2 663 aa12.64□□□□□ -0.39
TCF4-246ENST00000570287 DNAJC5BQ9UF47 199 aa12.64□□□□□ -0.39
TCF4-246ENST00000570287 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.63□□□□□ -0.39
TCF4-246ENST00000570287 MAPK8IP2Q13387 824 aaPredicted RBP12.62□□□□□ -0.39
TCF4-246ENST00000570287 ATF5Q9Y2D1 282 aaPredicted RBP12.62□□□□□ -0.39
TCF4-246ENST00000570287 ATXN8OSP0DMR3 200 aa12.61□□□□□ -0.39
TCF4-246ENST00000570287 TRIM41Q8WV44 630 aa12.6□□□□□ -0.39
TCF4-246ENST00000570287 LOC105371045A0A1W2PR82 267 aa12.6□□□□□ -0.39
TCF4-246ENST00000570287 BBXQ8WY36 941 aaPredicted RBP12.59□□□□□ -0.39
TCF4-246ENST00000570287 SMARCA4P51532 1647 aa12.59□□□□□ -0.39
TCF4-246ENST00000570287 PCGF6Q9BYE7 350 aa12.59□□□□□ -0.39
TCF4-246ENST00000570287 VASPP50552 380 aaPredicted RBP12.57□□□□□ -0.4
TCF4-246ENST00000570287 TOP2AP11388 1531 aaKnown RBP12.55□□□□□ -0.4
TCF4-246ENST00000570287 BICRAQ9NZM4 1560 aa12.52□□□□□ -0.4
TCF4-246ENST00000570287 EIF4G1Q04637 1599 aaKnown RBP12.51□□□□□ -0.41
TCF4-246ENST00000570287 MYCNP04198 464 aaPredicted RBP12.51□□□□□ -0.41
TCF4-246ENST00000570287 SCAF1Q9H7N4 1312 aaKnown RBP12.49□□□□□ -0.41
TCF4-246ENST00000570287 TRHP20396 242 aaPredicted RBP12.48□□□□□ -0.41
TCF4-246ENST00000570287 SMARCA2P51531 1590 aa12.45□□□□□ -0.42
TCF4-246ENST00000570287 SPRYD3Q8NCJ5 442 aa12.44□□□□□ -0.42
TCF4-246ENST00000570287 CCDC88BA6NC98 1476 aa12.44□□□□□ -0.42
TCF4-246ENST00000570287 FBXO3Q9UK99 471 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms