Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
COL4A1P02462 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC6.12□□□□□ -1.43
COL4A1P02462 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A1P02462 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A1P02462 AC068733.2-201ENST00000605434 1418 ntBASIC6.12□□□□□ -1.43
COL4A1P02462 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A1P02462 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.12□□□□□ -1.43
COL4A1P02462 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A1P02462 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A1P02462 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A1P02462 AL390316.1-201ENST00000406279 553 ntBASIC6.11□□□□□ -1.43
COL4A1P02462 AC046176.1-201ENST00000435260 1170 ntBASIC6.11□□□□□ -1.43
COL4A1P02462 TPT1P12-201ENST00000448968 492 ntBASIC6.11□□□□□ -1.43
COL4A1P02462 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC6.11□□□□□ -1.43
COL4A1P02462 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC6.11□□□□□ -1.43
COL4A1P02462 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC6.11□□□□□ -1.43
COL4A1P02462 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC6.11□□□□□ -1.43
COL4A1P02462 AC021193.1-201ENST00000511607 420 ntBASIC6.11□□□□□ -1.43
COL4A1P02462 OR8G5-201ENST00000524943 1041 ntBASIC6.11□□□□□ -1.43
COL4A1P02462 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC6.11□□□□□ -1.43
COL4A1P02462 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.11□□□□□ -1.43
COL4A1P02462 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC6.11□□□□□ -1.43
COL4A1P02462 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A1P02462 ARNTL2-207ENST00000542388 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A1P02462 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A1P02462 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A1P02462 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A1P02462 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A1P02462 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A1P02462 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC6.11□□□□□ -1.43
COL4A1P02462 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A1P02462 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.11□□□□□ -1.43
COL4A1P02462 RN7SKP153-201ENST00000365026 316 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 AL357515.1-201ENST00000402967 542 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 C4BPAP2-201ENST00000428434 478 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 VDAC1P6-201ENST00000430062 855 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 AC005154.2-201ENST00000438110 379 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 BX842559.2-201ENST00000451418 605 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC6.1□□□□□ -1.43
COL4A1P02462 AC026979.1-201ENST00000492525 396 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC6.1□□□□□ -1.43
COL4A1P02462 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A1P02462 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC6.1□□□□□ -1.43
COL4A1P02462 AC022884.2-201ENST00000578535 580 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
COL4A1P02462 AL162574.1-201ENST00000615702 950 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC6.1□□□□□ -1.43
COL4A1P02462 CR381572.2-201ENST00000624852 397 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 AL034408.1-201ENST00000637712 664 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A1P02462 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A1P02462 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC6.1□□□□□ -1.43
COL4A1P02462 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A1P02462 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
COL4A1P02462 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC6.1□□□□□ -1.43
COL4A1P02462 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A1P02462 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
COL4A1P02462 AL031123.3-201ENST00000623345 1837 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 AC099654.2-201ENST00000433031 1980 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A1P02462 AL137058.3-201ENST00000624531 3099 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
COL4A1P02462 RNA5SP223-201ENST00000365174 120 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 LRRC37BP1-201ENST00000398851 714 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A1P02462 RPL12P9-201ENST00000412942 488 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 AL158827.1-201ENST00000416300 391 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 AC093267.1-201ENST00000489176 961 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 AC011005.3-201ENST00000491624 395 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 RN7SL441P-201ENST00000492388 296 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 RNU2-30P-201ENST00000516209 141 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 RN7SKP276-201ENST00000516242 268 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC6.1□□□□□ -1.43
COL4A1P02462 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
COL4A1P02462 AL512310.9-201ENST00000553311 948 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 AL049839.1-201ENST00000556151 657 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 AL023583.1-201ENST00000607518 1143 ntBASIC6.1□□□□□ -1.43
COL4A1P02462 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A1P02462 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A1P02462 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A1P02462 AC010329.1-201ENST00000593903 8328 ntBASIC6.09□□□□□ -1.43
COL4A1P02462 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A1P02462 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A1P02462 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A1P02462 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A1P02462 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.09□□□□□ -1.43
COL4A1P02462 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A1P02462 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A1P02462 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC6.09□□□□□ -1.43
COL4A1P02462 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A1P02462 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC6.09□□□□□ -1.43
COL4A1P02462 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A1P02462 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A1P02462 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC6.09□□□□□ -1.43
COL4A1P02462 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC6.09□□□□□ -1.43
COL4A1P02462 RPS4XP9-201ENST00000405151 780 ntBASIC6.09□□□□□ -1.43
COL4A1P02462 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
COL4A1P02462 RN7SKP106-201ENST00000410832 272 ntBASIC6.09□□□□□ -1.43
COL4A1P02462 CHIAP3-201ENST00000423668 1133 ntBASIC6.09□□□□□ -1.43
COL4A1P02462 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms