Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC5.42□□□□□ -1.54
HOXA3O43365 AC005832.3-201ENST00000537929 631 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AC027667.1-201ENST00000545814 304 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA3O43365 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA3O43365 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA3O43365 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA3O43365 NMNAT1P5-201ENST00000559657 841 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA3O43365 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA3O43365 ANP32BP1-202ENST00000568553 737 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
HOXA3O43365 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXA3O43365 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA3O43365 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXA3O43365 PLEKHA3P1-201ENST00000598554 894 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AP001267.4-201ENST00000602598 545 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 U73023.1-201ENST00000603134 700 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA3O43365 AC111186.1-201ENST00000604684 130 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AC004241.2-201ENST00000614562 444 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AC023158.2-201ENST00000614876 543 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA3O43365 MIR7854-201ENST00000620068 65 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AC073534.2-201ENST00000620377 381 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA3O43365 AL683826.1-201ENST00000624104 627 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AL160394.1-201ENST00000624765 724 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
HOXA3O43365 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.42□□□□□ -1.54
HOXA3O43365 CASC19-232ENST00000641480 1244 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 AC090220.1-201ENST00000593078 1699 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXA3O43365 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA3O43365 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
HOXA3O43365 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXA3O43365 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA3O43365 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXA3O43365 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA3O43365 CNOT4-201ENST00000315544 3783 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA3O43365 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA3O43365 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA3O43365 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC5.42□□□□□ -1.54
HOXA3O43365 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA3O43365 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
HOXA3O43365 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXA3O43365 OR4C1P-202ENST00000641065 1569 ntBASIC5.42□□□□□ -1.54
HOXA3O43365 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA3O43365 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA3O43365 AP003486.1-201ENST00000525716 3994 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXA3O43365 AL359195.2-201ENST00000623657 4412 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 AP005139.1-201ENST00000580702 1647 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
HOXA3O43365 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA3O43365 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA3O43365 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXA3O43365 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA3O43365 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXA3O43365 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXA3O43365 OR9I1-203ENST00000641478 3027 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
HOXA3O43365 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXA3O43365 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA3O43365 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA3O43365 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA3O43365 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA3O43365 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA3O43365 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXA3O43365 ERG-202ENST00000398897 4651 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXA3O43365 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA3O43365 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA3O43365 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC5.41□□□□□ -1.54
HOXA3O43365 AL672167.1-206ENST00000356293 943 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
HOXA3O43365 RNU6-1339P-201ENST00000363574 91 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 VIM2P-201ENST00000402383 1294 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 AL359694.1-201ENST00000403247 604 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HOXA3O43365 RN7SKP129-201ENST00000410288 299 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 RNU2-16P-201ENST00000410712 136 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 RN7SKP142-201ENST00000411236 328 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXA3O43365 RPL7P8-201ENST00000411964 730 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXA3O43365 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXA3O43365 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC5.41□□□□□ -1.54
HOXA3O43365 RPL7P44-201ENST00000424827 742 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXA3O43365 MTCO1P54-201ENST00000430139 712 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 BX119917.1-201ENST00000432517 502 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 RPL7P29-201ENST00000437151 728 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 AL031667.1-201ENST00000440222 725 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 AC092641.1-201ENST00000440229 772 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 MTND4P18-201ENST00000447010 465 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 AC097359.1-201ENST00000447946 463 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
HOXA3O43365 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXA3O43365 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC5.41□□□□□ -1.54
HOXA3O43365 DNAJC19P8-201ENST00000452887 259 ntBASIC5.41□□□□□ -1.54
HOXA3O43365 RPL5P24-201ENST00000463742 885 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms