Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 Z99916.2-201ENST00000604037 246 ntBASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 MTDHP1-201ENST00000605323 784 ntBASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.15■□□□□ 0.66
PCDHB3Q9Y5E6 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
PCDHB3Q9Y5E6 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.14■□□□□ 0.66
PCDHB3Q9Y5E6 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PCDHB3Q9Y5E6 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
PCDHB3Q9Y5E6 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
PCDHB3Q9Y5E6 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.14■□□□□ 0.66
PCDHB3Q9Y5E6 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
PCDHB3Q9Y5E6 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
PCDHB3Q9Y5E6 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
PCDHB3Q9Y5E6 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 SNORA78-201ENST00000459373 127 ntBASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
PCDHB3Q9Y5E6 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 AP001412.1-201ENST00000608405 714 ntBASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDHB3Q9Y5E6 AC098818.2-201ENST00000564925 2320 ntBASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms