Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 APTR-205ENST00000447009 902 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 MYC-209ENST00000641252 345 ntBASIC15.83■□□□□ 0.12
FOXA2Q9Y261 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA2Q9Y261 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 MFF-205ENST00000354503 1085 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 CRK-204ENST00000574295 1391 ntTSL 5 BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA2Q9Y261 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA2Q9Y261 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 AC083880.1-201ENST00000608266 535 ntBASIC15.8■□□□□ 0.12
FOXA2Q9Y261 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 AL032819.2-201ENST00000624543 2162 ntBASIC15.8■□□□□ 0.12
FOXA2Q9Y261 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 PTGES2-AS1-201ENST00000443493 2100 ntBASIC15.8■□□□□ 0.12
FOXA2Q9Y261 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA2Q9Y261 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA2Q9Y261 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXA2Q9Y261 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA2Q9Y261 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
FOXA2Q9Y261 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms