Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 AC233263.1-201ENST00000578059 224 ntBASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.84
AP4E1Q9UPM8 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
AP4E1Q9UPM8 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
AP4E1Q9UPM8 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 MIR4651-201ENST00000582622 73 ntBASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
AP4E1Q9UPM8 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP4E1Q9UPM8 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 PRKY-204ENST00000533551 1019 ntBASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 AC116562.4-201ENST00000641316 2276 ntBASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP4E1Q9UPM8 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
AP4E1Q9UPM8 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
AP4E1Q9UPM8 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.29■□□□□ 0.84
AP4E1Q9UPM8 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
AP4E1Q9UPM8 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
AP4E1Q9UPM8 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
AP4E1Q9UPM8 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
AP4E1Q9UPM8 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
AP4E1Q9UPM8 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms