Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 KRT8P17-201ENST00000453110 1448 ntBASIC22.51■■□□□ 1.19
DDX41Q9UJV9 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 TSPY15P-201ENST00000457163 923 ntBASIC22.51■■□□□ 1.19
DDX41Q9UJV9 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 PENK-204ENST00000518770 863 ntTSL 2 BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 DHDH-203ENST00000522614 776 ntTSL 5 BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 BX088651.1-201ENST00000540551 451 ntBASIC22.51■■□□□ 1.19
DDX41Q9UJV9 MIR4785-201ENST00000585005 73 ntBASIC22.51■■□□□ 1.19
DDX41Q9UJV9 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC22.51■■□□□ 1.19
DDX41Q9UJV9 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 AC211429.1-201ENST00000415277 523 ntBASIC22.5■■□□□ 1.19
DDX41Q9UJV9 SAPCD2P4-201ENST00000424595 1171 ntBASIC22.5■■□□□ 1.19
DDX41Q9UJV9 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 AC026471.1-201ENST00000564629 3026 ntBASIC22.5■■□□□ 1.19
DDX41Q9UJV9 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
DDX41Q9UJV9 HTR7P1-201ENST00000538670 1336 ntBASIC22.5■■□□□ 1.19
DDX41Q9UJV9 BX323043.1-201ENST00000641006 1765 ntBASIC22.5■■□□□ 1.19
DDX41Q9UJV9 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 SMG8-203ENST00000578922 2178 ntBASIC22.49■■□□□ 1.19
DDX41Q9UJV9 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 AP005212.1-201ENST00000581547 1997 ntBASIC22.49■■□□□ 1.19
DDX41Q9UJV9 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 ECEL1P3-201ENST00000427961 737 ntBASIC22.49■■□□□ 1.19
DDX41Q9UJV9 RPS20-210ENST00000523936 899 ntTSL 2 BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 AF186192.3-201ENST00000583427 947 ntBASIC22.49■■□□□ 1.19
DDX41Q9UJV9 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
DDX41Q9UJV9 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC22.48■■□□□ 1.19
DDX41Q9UJV9 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
DDX41Q9UJV9 AC007225.1-201ENST00000566331 1836 ntBASIC22.47■■□□□ 1.19
DDX41Q9UJV9 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
DDX41Q9UJV9 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
DDX41Q9UJV9 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
DDX41Q9UJV9 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC22.47■■□□□ 1.19
DDX41Q9UJV9 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
DDX41Q9UJV9 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC22.47■■□□□ 1.19
DDX41Q9UJV9 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC22.47■■□□□ 1.19
DDX41Q9UJV9 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC22.47■■□□□ 1.19
DDX41Q9UJV9 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC22.47■■□□□ 1.19
DDX41Q9UJV9 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms