Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 AL135905.2-201ENST00000584934 1404 ntBASIC21.01■□□□□ 0.95
SIX4Q9UIU6 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.01■□□□□ 0.95
SIX4Q9UIU6 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21■□□□□ 0.95
SIX4Q9UIU6 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX4Q9UIU6 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX4Q9UIU6 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX4Q9UIU6 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX4Q9UIU6 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX4Q9UIU6 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
SIX4Q9UIU6 MIR718-201ENST00000390190 70 ntBASIC21■□□□□ 0.95
SIX4Q9UIU6 AL596275.1-201ENST00000423464 877 ntBASIC21■□□□□ 0.95
SIX4Q9UIU6 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC21■□□□□ 0.95
SIX4Q9UIU6 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21■□□□□ 0.95
SIX4Q9UIU6 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21■□□□□ 0.95
SIX4Q9UIU6 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21■□□□□ 0.95
SIX4Q9UIU6 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21■□□□□ 0.95
SIX4Q9UIU6 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX4Q9UIU6 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21■□□□□ 0.95
SIX4Q9UIU6 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX4Q9UIU6 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21■□□□□ 0.95
SIX4Q9UIU6 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21■□□□□ 0.95
SIX4Q9UIU6 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX4Q9UIU6 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SIX4Q9UIU6 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21■□□□□ 0.95
SIX4Q9UIU6 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 NIFKP9-201ENST00000419265 221 ntBASIC20.99■□□□□ 0.95
SIX4Q9UIU6 AL353807.1-201ENST00000427475 662 ntBASIC20.99■□□□□ 0.95
SIX4Q9UIU6 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 TREX1-205ENST00000625293 1783 ntBASIC20.99■□□□□ 0.95
SIX4Q9UIU6 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX4Q9UIU6 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 HLA-A-209ENST00000638375 975 ntBASIC20.98■□□□□ 0.95
SIX4Q9UIU6 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.98■□□□□ 0.95
SIX4Q9UIU6 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 SNORA78-201ENST00000459373 127 ntBASIC20.97■□□□□ 0.95
SIX4Q9UIU6 AP002982.1-201ENST00000492365 877 ntBASIC20.97■□□□□ 0.95
SIX4Q9UIU6 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 AC073195.1-201ENST00000607241 877 ntBASIC20.97■□□□□ 0.95
SIX4Q9UIU6 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SIX4Q9UIU6 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms