Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SIX2Q9NPC8 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.05■□□□□ 0.96
SIX2Q9NPC8 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.05■□□□□ 0.96
SIX2Q9NPC8 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SIX2Q9NPC8 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SIX2Q9NPC8 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 UNC93B4-201ENST00000505679 747 ntBASIC21.03■□□□□ 0.96
SIX2Q9NPC8 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SIX2Q9NPC8 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 AC008403.3-201ENST00000598924 454 ntBASIC21.02■□□□□ 0.96
SIX2Q9NPC8 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 AL121829.2-201ENST00000620908 328 ntBASIC21.02■□□□□ 0.96
SIX2Q9NPC8 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 AP006587.1-201ENST00000534129 1502 ntBASIC21.02■□□□□ 0.96
SIX2Q9NPC8 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SIX2Q9NPC8 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SIX2Q9NPC8 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.02■□□□□ 0.95
SIX2Q9NPC8 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SIX2Q9NPC8 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
SIX2Q9NPC8 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.02■□□□□ 0.95
SIX2Q9NPC8 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.02■□□□□ 0.95
SIX2Q9NPC8 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SIX2Q9NPC8 ZNF815P-204ENST00000434898 1737 ntBASIC21.01■□□□□ 0.95
SIX2Q9NPC8 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 YBX1P10-201ENST00000444752 975 ntBASIC21.01■□□□□ 0.95
SIX2Q9NPC8 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 UNC93B5-201ENST00000530315 699 ntBASIC21.01■□□□□ 0.95
SIX2Q9NPC8 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SIX2Q9NPC8 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms