Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AP001271.2-201ENST00000624018 1556 ntBASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC25.51■■□□□ 1.67
SHANK3Q9BYB0 SMG8-203ENST00000578922 2178 ntBASIC25.5■■□□□ 1.67
SHANK3Q9BYB0 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SHANK3Q9BYB0 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
SHANK3Q9BYB0 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC25.5■■□□□ 1.67
SHANK3Q9BYB0 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC25.5■■□□□ 1.67
SHANK3Q9BYB0 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC25.5■■□□□ 1.67
SHANK3Q9BYB0 AL353719.1-201ENST00000566847 864 ntBASIC25.5■■□□□ 1.67
SHANK3Q9BYB0 AC011558.1-201ENST00000623459 338 ntBASIC25.5■■□□□ 1.67
SHANK3Q9BYB0 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SHANK3Q9BYB0 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC25.5■■□□□ 1.67
SHANK3Q9BYB0 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 LINC01465-201ENST00000408887 1940 ntBASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 HCG4P8-203ENST00000443049 980 ntBASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 AC112907.2-201ENST00000448639 330 ntBASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC25.49■■□□□ 1.67
SHANK3Q9BYB0 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
SHANK3Q9BYB0 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC25.48■■□□□ 1.67
SHANK3Q9BYB0 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SHANK3Q9BYB0 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
SHANK3Q9BYB0 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
SHANK3Q9BYB0 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
SHANK3Q9BYB0 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC25.48■■□□□ 1.67
SHANK3Q9BYB0 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC25.48■■□□□ 1.67
SHANK3Q9BYB0 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC25.48■■□□□ 1.67
SHANK3Q9BYB0 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC25.48■■□□□ 1.67
SHANK3Q9BYB0 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
SHANK3Q9BYB0 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SHANK3Q9BYB0 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SHANK3Q9BYB0 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SHANK3Q9BYB0 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 SPDYE13P-201ENST00000445314 798 ntBASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 ETFA-216ENST00000560726 942 ntTSL 3 BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 AL160286.2-201ENST00000567150 934 ntBASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 IER3-202ENST00000376377 1350 ntBASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC25.47■■□□□ 1.67
SHANK3Q9BYB0 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 AC026310.3-201ENST00000625186 2373 ntBASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 SPDYE15P-201ENST00000424157 909 ntBASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC25.46■■□□□ 1.67
SHANK3Q9BYB0 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
SHANK3Q9BYB0 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.67
SHANK3Q9BYB0 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC25.45■■□□□ 1.67
SHANK3Q9BYB0 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
SHANK3Q9BYB0 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
SHANK3Q9BYB0 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
SHANK3Q9BYB0 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
SHANK3Q9BYB0 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.66
SHANK3Q9BYB0 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC25.45■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms