Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 AL136038.3-201ENST00000561909 1096 ntBASIC19.46■□□□□ 0.71
VPS13AQ96RL7 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 AC004951.3-201ENST00000418645 1148 ntBASIC19.46■□□□□ 0.71
VPS13AQ96RL7 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 AF106564.1-201ENST00000607058 2553 ntBASIC19.46■□□□□ 0.71
VPS13AQ96RL7 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13AQ96RL7 AL031432.5-201ENST00000641059 760 ntBASIC19.46■□□□□ 0.71
VPS13AQ96RL7 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS13AQ96RL7 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS13AQ96RL7 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS13AQ96RL7 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS13AQ96RL7 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
VPS13AQ96RL7 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS13AQ96RL7 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS13AQ96RL7 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS13AQ96RL7 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS13AQ96RL7 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS13AQ96RL7 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
VPS13AQ96RL7 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS13AQ96RL7 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS13AQ96RL7 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS13AQ96RL7 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 TSPY12P-201ENST00000421279 868 ntBASIC19.43■□□□□ 0.7
VPS13AQ96RL7 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 AC092329.2-201ENST00000598402 547 ntBASIC19.43■□□□□ 0.7
VPS13AQ96RL7 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 AP000523.1-201ENST00000398242 1049 ntBASIC19.43■□□□□ 0.7
VPS13AQ96RL7 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 IFNL4P1-201ENST00000607083 540 ntBASIC19.43■□□□□ 0.7
VPS13AQ96RL7 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13AQ96RL7 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 ZNF444P1-201ENST00000559497 298 ntBASIC19.42■□□□□ 0.7
VPS13AQ96RL7 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.42■□□□□ 0.7
VPS13AQ96RL7 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 FAAHP1-202ENST00000446499 1238 ntBASIC19.42■□□□□ 0.7
VPS13AQ96RL7 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 AP003041.3-201ENST00000527151 707 ntBASIC19.42■□□□□ 0.7
VPS13AQ96RL7 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS13AQ96RL7 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS13AQ96RL7 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS13AQ96RL7 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
VPS13AQ96RL7 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.41■□□□□ 0.7
VPS13AQ96RL7 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS13AQ96RL7 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS13AQ96RL7 KRT8P20-201ENST00000423953 1409 ntBASIC19.41■□□□□ 0.7
VPS13AQ96RL7 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms