Protein–RNA interactions for Protein: Q93008

USP9X, Probable ubiquitin carboxyl-terminal hydrolase FAF-X, humanhuman

Predicted RBP Predictions only

Length 2,570 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP9XQ93008 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.13■□□□□ 0.33
USP9XQ93008 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP9XQ93008 BX119927.1-201ENST00000636596 1552 ntBASIC17.13■□□□□ 0.33
USP9XQ93008 CASK-201ENST00000378154 2494 ntTSL 5 BASIC17.13■□□□□ 0.33
USP9XQ93008 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC17.13■□□□□ 0.33
USP9XQ93008 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP9XQ93008 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
USP9XQ93008 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP9XQ93008 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.13■□□□□ 0.33
USP9XQ93008 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.13■□□□□ 0.33
USP9XQ93008 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
USP9XQ93008 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.13■□□□□ 0.33
USP9XQ93008 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.13■□□□□ 0.33
USP9XQ93008 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP9XQ93008 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.13■□□□□ 0.33
USP9XQ93008 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.13■□□□□ 0.33
USP9XQ93008 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.13■□□□□ 0.33
USP9XQ93008 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC17.13■□□□□ 0.33
USP9XQ93008 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP9XQ93008 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP9XQ93008 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
USP9XQ93008 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.12■□□□□ 0.33
USP9XQ93008 AL645929.1-201ENST00000420084 975 ntBASIC17.12■□□□□ 0.33
USP9XQ93008 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.12■□□□□ 0.33
USP9XQ93008 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
USP9XQ93008 AC112907.2-201ENST00000448639 330 ntBASIC17.12■□□□□ 0.33
USP9XQ93008 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.12■□□□□ 0.33
USP9XQ93008 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP9XQ93008 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
USP9XQ93008 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
USP9XQ93008 RNA5SP419-201ENST00000515908 135 ntBASIC17.12■□□□□ 0.33
USP9XQ93008 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP9XQ93008 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.12■□□□□ 0.33
USP9XQ93008 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP9XQ93008 MIR2861-201ENST00000636310 90 ntBASIC17.12■□□□□ 0.33
USP9XQ93008 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP9XQ93008 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
USP9XQ93008 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP9XQ93008 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.11■□□□□ 0.33
USP9XQ93008 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.11■□□□□ 0.33
USP9XQ93008 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.11■□□□□ 0.33
USP9XQ93008 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP9XQ93008 HLA-A-201ENST00000376802 1334 ntBASIC17.11■□□□□ 0.33
USP9XQ93008 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP9XQ93008 LINC01311-201ENST00000565162 1445 ntBASIC17.11■□□□□ 0.33
USP9XQ93008 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP9XQ93008 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP9XQ93008 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.11■□□□□ 0.33
USP9XQ93008 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP9XQ93008 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP9XQ93008 TSPY12P-201ENST00000421279 868 ntBASIC17.1■□□□□ 0.33
USP9XQ93008 AC092597.1-201ENST00000487352 616 ntBASIC17.1■□□□□ 0.33
USP9XQ93008 AC092329.2-201ENST00000598402 547 ntBASIC17.1■□□□□ 0.33
USP9XQ93008 AL139424.1-201ENST00000607572 797 ntBASIC17.1■□□□□ 0.33
USP9XQ93008 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.1■□□□□ 0.33
USP9XQ93008 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP9XQ93008 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
USP9XQ93008 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
USP9XQ93008 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP9XQ93008 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP9XQ93008 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP9XQ93008 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP9XQ93008 AC016734.2-201ENST00000624325 1377 ntBASIC17.1■□□□□ 0.33
USP9XQ93008 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP9XQ93008 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP9XQ93008 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.1■□□□□ 0.33
USP9XQ93008 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.1■□□□□ 0.33
USP9XQ93008 AP003041.3-201ENST00000527151 707 ntBASIC17.1■□□□□ 0.33
USP9XQ93008 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.1■□□□□ 0.33
USP9XQ93008 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP9XQ93008 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP9XQ93008 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.1■□□□□ 0.33
USP9XQ93008 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
USP9XQ93008 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP9XQ93008 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.1■□□□□ 0.33
USP9XQ93008 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP9XQ93008 KRT8P17-201ENST00000453110 1448 ntBASIC17.1■□□□□ 0.33
USP9XQ93008 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP9XQ93008 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.09■□□□□ 0.33
USP9XQ93008 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
USP9XQ93008 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.09■□□□□ 0.33
USP9XQ93008 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.09■□□□□ 0.33
USP9XQ93008 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
USP9XQ93008 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP9XQ93008 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms