Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 AC011298.2-201ENST00000617989 482 ntBASIC19.11■□□□□ 0.65
LMX1AQ8TE12 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 RCC2P6-201ENST00000526625 1557 ntBASIC19.1■□□□□ 0.65
LMX1AQ8TE12 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
LMX1AQ8TE12 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
LMX1AQ8TE12 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.1■□□□□ 0.65
LMX1AQ8TE12 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LMX1AQ8TE12 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LMX1AQ8TE12 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LMX1AQ8TE12 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LMX1AQ8TE12 TERF1P1-201ENST00000311003 1181 ntBASIC19.1■□□□□ 0.65
LMX1AQ8TE12 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
LMX1AQ8TE12 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.1■□□□□ 0.65
LMX1AQ8TE12 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.1■□□□□ 0.65
LMX1AQ8TE12 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.1■□□□□ 0.65
LMX1AQ8TE12 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.1■□□□□ 0.65
LMX1AQ8TE12 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
LMX1AQ8TE12 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LMX1AQ8TE12 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 AC004951.3-201ENST00000418645 1148 ntBASIC19.09■□□□□ 0.65
LMX1AQ8TE12 KRT18P35-201ENST00000510488 1269 ntBASIC19.09■□□□□ 0.65
LMX1AQ8TE12 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 AC130371.2-201ENST00000619443 611 ntBASIC19.09■□□□□ 0.65
LMX1AQ8TE12 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.09■□□□□ 0.65
LMX1AQ8TE12 KRT8P8-201ENST00000434750 1448 ntBASIC19.08■□□□□ 0.65
LMX1AQ8TE12 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.08■□□□□ 0.65
LMX1AQ8TE12 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LMX1AQ8TE12 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LMX1AQ8TE12 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LMX1AQ8TE12 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
LMX1AQ8TE12 AP001271.2-201ENST00000624018 1556 ntBASIC19.08■□□□□ 0.65
LMX1AQ8TE12 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 ARMC10P1-201ENST00000313754 855 ntBASIC19.08■□□□□ 0.64
LMX1AQ8TE12 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.08■□□□□ 0.64
LMX1AQ8TE12 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 LIN28AP1-201ENST00000429574 405 ntBASIC19.07■□□□□ 0.64
LMX1AQ8TE12 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 ECEL1P2-202ENST00000465689 757 ntBASIC19.07■□□□□ 0.64
LMX1AQ8TE12 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 EGLN1P1-201ENST00000531623 762 ntBASIC19.07■□□□□ 0.64
LMX1AQ8TE12 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 AP000692.2-201ENST00000608391 879 ntBASIC19.07■□□□□ 0.64
LMX1AQ8TE12 AL590326.2-201ENST00000625139 305 ntBASIC19.07■□□□□ 0.64
LMX1AQ8TE12 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LMX1AQ8TE12 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms