Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 AC131212.4-201ENST00000623606 975 ntBASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 FSCN1P1-201ENST00000568912 1481 ntBASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 NTF6B-201ENST00000591913 560 ntBASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 TMEM179-206ENST00000616017 1645 ntBASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.65■□□□□ 0.74
HDDC3Q8N4P3 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
HDDC3Q8N4P3 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
HDDC3Q8N4P3 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HDDC3Q8N4P3 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 LIN28AP1-201ENST00000429574 405 ntBASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 AC004980.1-204ENST00000429707 299 ntBASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 SLC25A3P1-201ENST00000443844 931 ntBASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 FITM1-202ENST00000559294 800 ntBASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 AC026271.3-201ENST00000571884 352 ntBASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
HDDC3Q8N4P3 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 DUX4L26-201ENST00000489078 1255 ntBASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HDDC3Q8N4P3 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 AP001271.2-201ENST00000624018 1556 ntBASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HDDC3Q8N4P3 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms