Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 PHGDH-210ENST00000641115 1638 ntBASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SLC44A3Q8N4M1 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 AC140113.3-201ENST00000605663 199 ntBASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
SLC44A3Q8N4M1 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.1■□□□□ 0.81
SLC44A3Q8N4M1 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 PKD1P6-201ENST00000343738 4769 ntBASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 AC026396.1-201ENST00000419388 421 ntBASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 AL671277.2-201ENST00000458060 996 ntBASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 Z85996.1-201ENST00000494644 937 ntBASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SLC44A3Q8N4M1 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.08■□□□□ 0.81
SLC44A3Q8N4M1 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SLC44A3Q8N4M1 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
SLC44A3Q8N4M1 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SLC44A3Q8N4M1 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SLC44A3Q8N4M1 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SLC44A3Q8N4M1 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SLC44A3Q8N4M1 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
SLC44A3Q8N4M1 AL450487.1-201ENST00000426799 995 ntBASIC20.08■□□□□ 0.81
SLC44A3Q8N4M1 AL359075.1-203ENST00000462729 1002 ntBASIC20.08■□□□□ 0.81
SLC44A3Q8N4M1 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SLC44A3Q8N4M1 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.08■□□□□ 0.8
SLC44A3Q8N4M1 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SLC44A3Q8N4M1 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.8
SLC44A3Q8N4M1 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SLC44A3Q8N4M1 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
SLC44A3Q8N4M1 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC44A3Q8N4M1 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC44A3Q8N4M1 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC44A3Q8N4M1 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC44A3Q8N4M1 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SLC44A3Q8N4M1 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC44A3Q8N4M1 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SLC44A3Q8N4M1 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.07■□□□□ 0.8
SLC44A3Q8N4M1 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms